--- a +++ b/config/config_rf_crispr.yml @@ -0,0 +1,20 @@ +--- +DATA: + dir: "/Volumes/GoogleDrive-108722195023672559969/Shared drives/QuantitativeBiology/Datasets" + min_count: 100 + +ML: + model: "rf" + dataset_y: "essentiality" + params_grid: + criterion: ["mse"] + n_estimators: [600] # [400, 600, 800, 1000] + min_samples_split: [5] # [2, 5] + min_samples_leaf: [2] # [1, 2] + max_features: ["sqrt"] + n_jobs: [4] + cv: + n_splits: 5 + +OUTPUT: + file: "data/ML_phenotype_prediction_crispr.csv" \ No newline at end of file