import os
import pytest

from openomics import ClinicalData

cohort_folder_path = "tests/data/TCGA_LUAD/"


@pytest.fixture
def generate_TCGA_clinical():
    clinical = ClinicalData(
        file=os.path.join(cohort_folder_path, "nationwidechildrens.org_clinical_patient_luad.txt"),
        patient_index="bcr_patient_barcode")
    return clinical