--- a +++ b/tests/test_clinical.py @@ -0,0 +1,14 @@ +import os +import pytest + +from openomics import ClinicalData + +cohort_folder_path = "tests/data/TCGA_LUAD/" + + +@pytest.fixture +def generate_TCGA_clinical(): + clinical = ClinicalData( + file=os.path.join(cohort_folder_path, "nationwidechildrens.org_clinical_patient_luad.txt"), + patient_index="bcr_patient_barcode") + return clinical