a b/tests/test_clinical.py 

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import os





  
  

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import pytest





  
  

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from openomics import ClinicalData





  
  

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cohort_folder_path = "tests/data/TCGA_LUAD/"





  
  

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@pytest.fixture





  
  

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def generate_TCGA_clinical():





  
  

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    clinical = ClinicalData(





  
  

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        file=os.path.join(cohort_folder_path, "nationwidechildrens.org_clinical_patient_luad.txt"),





  
  

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        patient_index="bcr_patient_barcode")





  
  

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    return clinical