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/requirements.txt
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| a | b/requirements.txt | ||
|---|---|---|---|
| 1 | # Core |
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| 2 | numpy |
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| 3 | pandas |
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| 4 | dask[distributed] |
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| 5 | networkx |
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| 6 | scipy |
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| 7 | astropy |
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| 8 | |||
| 9 | # Bioinf |
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| 10 | biopython |
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| 11 | bioservices |
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| 12 | pyfaidx |
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| 13 | goatools |
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| 14 | obonet |
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| 15 | gtfparse |
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| 16 | |||
| 17 | # IO utils |
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| 18 | h5py != 3.7.0 |
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| 19 | lxml >= 4.9.1 |
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| 20 | gunicorn |
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| 21 | six |
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| 22 | validators |
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| 23 | sqlalchemy |
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| 24 | filetype |
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| 25 | rarfile |
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| 26 | filetype |
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| 27 | logzero |
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| 28 | tqdm |
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| 29 | itsdangerous |
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| 30 | ruamel.yaml |
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| 31 | |||
| 32 | # Visualizations |
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| 33 | bokeh |
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| 34 | matplotlib |
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| 35 | |||
| 36 | # Dash |
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| 37 | dash |
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| 38 | dash-daq |
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| 39 | dash-bootstrap-components |
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| 40 | flask>=2.2.5 # not directly required, pinned by Snyk to avoid a vulnerability |
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| 41 | setuptools>=65.5.1 # not directly required, pinned by Snyk to avoid a vulnerability |