--- a +++ b/requirements.txt @@ -0,0 +1,41 @@ +# Core +numpy +pandas +dask[distributed] +networkx +scipy +astropy + +# Bioinf +biopython +bioservices +pyfaidx +goatools +obonet +gtfparse + +# IO utils +h5py != 3.7.0 +lxml >= 4.9.1 +gunicorn +six +validators +sqlalchemy +filetype +rarfile +filetype +logzero +tqdm +itsdangerous +ruamel.yaml + +# Visualizations +bokeh +matplotlib + +# Dash +dash +dash-daq +dash-bootstrap-components +flask>=2.2.5 # not directly required, pinned by Snyk to avoid a vulnerability +setuptools>=65.5.1 # not directly required, pinned by Snyk to avoid a vulnerability