54 lines (53 with data), 2.0 kB

Package: OmicsFold
Type: Package
Title: Toolkit containing Utilities for Integration of Multi-omic data
Version: 1.0.1
Authors@R: c(
    person("Shameer", "Khader", email = "shameer.khader@astrazeneca.com", role = c("own", "pdr")),
    person("Carlos", "Roca", email = "carlos.roca@astrazeneca.com", role = c("cre")),
    person("Vancheswaran", "Gopalakrishnan", email = "vancheswaran.gopalakrishnan@astrazeneca.com", role = c("ctb")),
    person("Stuart", "McHattie", email = "stuart.mchattie@tessella.com", role = c("aut")),
    person("Jonathan", "Ayling", email = "aylj@tessella.com", role = c("aut")),
    person("Tilly", "Softly", email = "tilly.softly@capgemini.com", role = c("aut")),
    person("Andrew", "Pollard", email = "andrew.pollard@capgemini.com", role = c("aut")),
    person("Ben", "Sparklin", email = "ben.sparklin@astrazeneca.com", role = c("ctb")),
    person("Chiyun", "Lee", email = "chiyun.lee@astrazeneca.com", role = c("ctb")),
    person("AstraZeneca", role = c("cph")))
Description: Provides a unified toolkit for the analysis and integration of multi-omic high-throughput data.
    It relies upon the mixOmics toolkit to provide implementations of many of the underlying projection to latent structures
    (PLS) methods used to analyse high-dimensional data. In addition to this, it includes custom implementations of
    data pre-processing, normalisation, collation, model validation, visualisation & output functions.
License: Copyright (2021) AstraZeneca
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.6.0)
biocViews:
Imports:
    devtools,
    rlang (>= 0.4.5),
    dplyr,
    magrittr,
    reshape2,
    stringr,
    Rtsne,
    igraph,
    metagenomeSeq,
    ggdendro,
    viridis,
    scales,
    gplots,
    grid,
    ggforce,
    WGCNA,
    anRichment,
    anRichmentMethods,
    GO.db,
    org.Mm.eg.db
Suggests:
    rgl,
    umap,
    vegan,
    biomaRt,
    testthat (>= 3.0.0)
RoxygenNote: 7.1.2
Config/testthat/edition: 3