a b/OmicsFold/nextflow_pipeline/multiomics_job.sh 

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#!/bin/bash





  
  

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#script to submit nextflow multiomics job to slurm job scheduler





  
  

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#SBATCH -J multiomics_nextflow





  
  

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#SBATCH -o multiomics_%j_output.txt





  
  

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#SBATCH -e multiomics_%j_error.txt





  
  

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#SBATCH -N 1





  
  

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#SBATCH --time=200:00:00





  
  

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#SBATCH --cpus-per-task=20





  
  

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#SBATCH --mem=128GB





  
  

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nextflow run multiomics_nextflow.nf.groovy --data $1 --data_labels $2





  
  

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#example usage on command line





  
  

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#sbatch multiomics_job.sh data.rds data_labels.rds