--- a
+++ b/OmicsFold/man/plot.predicted.projection.Rd
@@ -0,0 +1,32 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/sample_analysis.R
+\name{plot.predicted.projection}
+\alias{plot.predicted.projection}
+\title{Plot projections for a prediction result}
+\usage{
+\method{plot}{predicted.projection}(prediction, classes.new)
+}
+\arguments{
+\item{prediction}{mixOmics sPLS-DA prediction object, generated by the
+`predict` method.}
+
+\item{classes.new}{Factor indicating the classes of the new data.}
+}
+\value{
+ggplot plot of the predicted data in the sPLS-DA model space.
+}
+\description{
+Function to plot a single-omics sPLS-DA prediction projected into the model
+space. While confusion matrices of predicted data can easily be obtained,
+there is no built-in function to plot the projection into the model space and
+hence give a visualisation of the quality of the prediction. The plot will
+show the centroids of the classes as large points, surrounded by the sample
+projection as small points, coloured according to class. A good prediction
+will cluster each class around the appropriate centroid.
+}
+\examples{
+\dontrun{
+prediction.projection <- plot.predicted.projection(prediction.replicate.data, replicate.data.classes)
+print(prediction.projection)
+}
+}