--- a
+++ b/OmicsFold/man/normalise.clr.Rd
@@ -0,0 +1,31 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/MixMC.R
+\name{normalise.clr}
+\alias{normalise.clr}
+\title{Apply centered log-ratio normalisation}
+\usage{
+normalise.clr(input, offset = 0)
+}
+\arguments{
+\item{input}{Scaled OTU data as proportions 0-1, e.g. output by
+normalise.TSS().}
+
+\item{offset}{Optional offset to apply to raw data to avoid logging of zero
+values. Only needed if any zeroes are present - should generally be set very
+small, e.g. 0.000001.}
+}
+\value{
+Data normalised by the CLR method.
+}
+\description{
+Apply centered log-ratio (CLR) normalisation to sum scaled OTU count data.
+This is another method for converting the compositional data, i.e.
+proportional data in the range 0..1 to Euclidean space which is most
+appropriate for the linear models. Note that this should only be applied to
+OTU data, as it applies another inter-sample normalisation.
+}
+\examples{
+\dontrun{
+normalise.clr(otu.data.tss)
+}
+}