--- a
+++ b/OmicsFold/man/export.matrix.as.network.Rd
@@ -0,0 +1,44 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/feature_loadings.R
+\name{export.matrix.as.network}
+\alias{export.matrix.as.network}
+\title{Export a covariance matrix as a network CSV file}
+\usage{
+export.matrix.as.network(
+  m,
+  filename,
+  cutoff = NA,
+  block.association = NULL,
+  block.feature.count = 20
+)
+}
+\arguments{
+\item{m}{Symmetrical matrix of association scores.}
+
+\item{filename}{Filename to which to write network output.}
+
+\item{cutoff}{Optional value of which to filter associations.}
+
+\item{block.association}{If the matrix does not contain equal number of
+variables from each block, then a custom list of block associations can be
+passed in.}
+
+\item{block.feature.count}{The number of features selected from each block,
+defaulting to 20.}
+}
+\value{
+The long-form network data that is also written to disk
+}
+\description{
+Export a covariance matrix, e.g. one generated using
+`find.feature.associations` as data describing the association network and
+suitable for e.g. loading into Cytoscape. The method can optionally take a
+cutoff value, which is used to threshold (absolute) association scores. The
+output is written to disk as a CSV file using the filename given.
+}
+\examples{
+\dontrun{
+export.matrix.as.network(mat, "network.csv")
+export.matrix.as.network(find.feature.associations(diablo.trained.analysis, 3), filename="network.csv", cutoff=0.7)
+}
+}