% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/feature_loadings.R

\name{export.matrix.as.network}

\alias{export.matrix.as.network}

\title{Export a covariance matrix as a network CSV file}

\usage{

export.matrix.as.network(

  m,

  filename,

  cutoff = NA,

  block.association = NULL,

  block.feature.count = 20

)

}

\arguments{

\item{m}{Symmetrical matrix of association scores.}

\item{filename}{Filename to which to write network output.}

\item{cutoff}{Optional value of which to filter associations.}

\item{block.association}{If the matrix does not contain equal number of

variables from each block, then a custom list of block associations can be

passed in.}

\item{block.feature.count}{The number of features selected from each block,

defaulting to 20.}

}

\value{

The long-form network data that is also written to disk

}

\description{

Export a covariance matrix, e.g. one generated using

`find.feature.associations` as data describing the association network and

suitable for e.g. loading into Cytoscape. The method can optionally take a

cutoff value, which is used to threshold (absolute) association scores. The

output is written to disk as a CSV file using the filename given.

}

\examples{

\dontrun{

export.matrix.as.network(mat, "network.csv")

export.matrix.as.network(find.feature.associations(diablo.trained.analysis, 3), filename="network.csv", cutoff=0.7)

}

}