--- a +++ b/OmicsFold/DESCRIPTION @@ -0,0 +1,53 @@ +Package: OmicsFold +Type: Package +Title: Toolkit containing Utilities for Integration of Multi-omic data +Version: 1.0.1 +Authors@R: c( + person("Shameer", "Khader", email = "shameer.khader@astrazeneca.com", role = c("own", "pdr")), + person("Carlos", "Roca", email = "carlos.roca@astrazeneca.com", role = c("cre")), + person("Vancheswaran", "Gopalakrishnan", email = "vancheswaran.gopalakrishnan@astrazeneca.com", role = c("ctb")), + person("Stuart", "McHattie", email = "stuart.mchattie@tessella.com", role = c("aut")), + person("Jonathan", "Ayling", email = "aylj@tessella.com", role = c("aut")), + person("Tilly", "Softly", email = "tilly.softly@capgemini.com", role = c("aut")), + person("Andrew", "Pollard", email = "andrew.pollard@capgemini.com", role = c("aut")), + person("Ben", "Sparklin", email = "ben.sparklin@astrazeneca.com", role = c("ctb")), + person("Chiyun", "Lee", email = "chiyun.lee@astrazeneca.com", role = c("ctb")), + person("AstraZeneca", role = c("cph"))) +Description: Provides a unified toolkit for the analysis and integration of multi-omic high-throughput data. + It relies upon the mixOmics toolkit to provide implementations of many of the underlying projection to latent structures + (PLS) methods used to analyse high-dimensional data. In addition to this, it includes custom implementations of + data pre-processing, normalisation, collation, model validation, visualisation & output functions. +License: Copyright (2021) AstraZeneca +Encoding: UTF-8 +LazyData: true +Depends: R (>= 3.6.0) +biocViews: +Imports: + devtools, + rlang (>= 0.4.5), + dplyr, + magrittr, + reshape2, + stringr, + Rtsne, + igraph, + metagenomeSeq, + ggdendro, + viridis, + scales, + gplots, + grid, + ggforce, + WGCNA, + anRichment, + anRichmentMethods, + GO.db, + org.Mm.eg.db +Suggests: + rgl, + umap, + vegan, + biomaRt, + testthat (>= 3.0.0) +RoxygenNote: 7.1.2 +Config/testthat/edition: 3