added	src/multivelo/settings.py
added	src/multivelo/steady_chrom_func.py
added	test_files/adata_atac_postpro.h5ad
added	test_files/adata_postpro.h5ad
added	test_files/feature_linkage.bedpe
added	test_files/fig2_for_test.h5ad
added	test_files/nn_dist.txt
added	test_files/nn_idx.txt
added	test_files/peak_annotation.tsv
added	tests/fig2_test.py
added	tests/fig4_test.py
added	train_neural_network/agg_fig_data.ipynb
added	train_neural_network/data/rates/fig_rates_train/alpha.txt
added	train_neural_network/data/rates/fig_rates_train/alpha_c.txt
added	train_neural_network/data/rates/fig_rates_train/beta.txt
added	train_neural_network/data/rates/fig_rates_train/gamma.txt
added	train_neural_network/neural_nets/dir0.pt
added	train_neural_network/neural_nets/dir1.pt
added	train_neural_network/neural_nets/dir2_m1.pt
added	train_neural_network/neural_nets/dir2_m2.pt
added	train_neural_network/sim_data_from_rates.ipynb
added	train_neural_network/train_neural_net.ipynb
added	train_neural_network/training_tools.py