--- a +++ b/setup.cfg @@ -0,0 +1,67 @@ +[metadata] +name = multivelo +version = 0.1.5 +author = Chen Li +author_email = chlseven@umich.edu +description = Multi-omic extension of single-cell RNA velocity +long_description = file: README.rst +url = https://github.com/welch-lab/MultiVelo +keywords = + RNA velocity + single-cell + transcriptomics + chromatin + epigenetic + epigenomic + gene regulation + multi-omic + dynamical +license = BSD 3-Clause License +classifiers = + Development Status :: 4 - Beta + Intended Audience :: Science/Research + License :: OSI Approved :: BSD License + Natural Language :: English + Operating System :: MacOS :: MacOS X + Operating System :: Microsoft :: Windows + Operating System :: POSIX :: Linux + Programming Language :: Python :: 3 + Programming Language :: Python :: 3.7 + Programming Language :: Python :: 3.8 + Programming Language :: Python :: 3.9 + Topic :: Scientific/Engineering :: Bio-Informatics + Topic :: Scientific/Engineering :: Visualization + +[options] +package_dir = + = src +packages = find: +include_package_data = True +python_requires = >=3.7 +install_requires = + anndata>=0.7.5 + scanpy>=1.5 + scvelo>=0.2.3 + loompy>=2.0.12 + umap-learn>=0.3.10 + h5py>=2.10.0 + numba>=0.41.0 + numpy>=1.17 + scipy>=1.4.1 + pandas>=0.23 + scikit-learn>=0.23.0 + matplotlib>=3.3.0 + seaborn>=0.11.0 + tqdm + joblib + ipywidgets<=7.7.1 + +[options.package_data] +* = neural_nets/* + +[options.packages.find] +where = src +exclude = + tests + multivelo_demo + docs