[metadata]

name = multivelo

version = 0.1.5

author = Chen Li

author_email = chlseven@umich.edu

description = Multi-omic extension of single-cell RNA velocity

long_description = file: README.rst

url = https://github.com/welch-lab/MultiVelo

keywords =

    RNA velocity

    single-cell

    transcriptomics

    chromatin

    epigenetic

    epigenomic

    gene regulation

    multi-omic

    dynamical

license = BSD 3-Clause License

classifiers =

    Development Status :: 4 - Beta

    Intended Audience :: Science/Research

    License :: OSI Approved :: BSD License

    Natural Language :: English

    Operating System :: MacOS :: MacOS X

    Operating System :: Microsoft :: Windows

    Operating System :: POSIX :: Linux

    Programming Language :: Python :: 3

    Programming Language :: Python :: 3.7

    Programming Language :: Python :: 3.8

    Programming Language :: Python :: 3.9

    Topic :: Scientific/Engineering :: Bio-Informatics

    Topic :: Scientific/Engineering :: Visualization

[options]

package_dir =

    = src

packages = find:

include_package_data = True

python_requires = >=3.7

install_requires =

    anndata>=0.7.5

    scanpy>=1.5

    scvelo>=0.2.3

    loompy>=2.0.12

    umap-learn>=0.3.10

    h5py>=2.10.0

    numba>=0.41.0

    numpy>=1.17

    scipy>=1.4.1

    pandas>=0.23

    scikit-learn>=0.23.0

    matplotlib>=3.3.0

    seaborn>=0.11.0

    tqdm

    joblib

    ipywidgets<=7.7.1

[options.package_data]

* = neural_nets/*

[options.packages.find]

where = src

exclude =

    tests

    multivelo_demo

    docs