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/docs/api.rst
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| 1 | .. automodule:: multivelo |
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| 2 | |||
| 3 | API |
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| 4 | === |
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| 5 | |||
| 6 | Import MultiVelo as:: |
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| 7 | |||
| 8 | import multivelo as mv |
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| 9 | |||
| 10 | |||
| 11 | Preprocessing |
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| 12 | ------------------ |
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| 13 | |||
| 14 | .. autosummary:: |
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| 15 | :toctree: . |
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| 16 | |||
| 17 | aggregate_peaks_10x |
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| 18 | tfidf_norm |
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| 19 | gen_wnn |
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| 20 | knn_smooth_chrom |
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| 21 | calculate_qc_metrics |
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| 22 | |||
| 23 | Tools |
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| 24 | ------------------ |
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| 25 | |||
| 26 | .. autosummary:: |
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| 27 | :toctree: . |
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| 28 | |||
| 29 | recover_dynamics_chrom |
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| 30 | velocity_chrom |
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| 31 | set_velocity_genes |
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| 32 | velocity_graph |
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| 33 | velocity_embedding_stream |
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| 34 | latent_time |
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| 35 | LRT_decoupling |
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| 36 | |||
| 37 | Plotting |
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| 38 | ------------------ |
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| 39 | |||
| 40 | .. autosummary:: |
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| 41 | :toctree: . |
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| 42 | |||
| 43 | likelihood_plot |
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| 44 | pie_summary |
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| 45 | switch_time_summary |
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| 46 | dynamic_plot |
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| 47 | scatter_plot |