--- a +++ b/docs/api.rst @@ -0,0 +1,47 @@ +.. automodule:: multivelo + +API +=== + +Import MultiVelo as:: + + import multivelo as mv + + +Preprocessing +------------------ + +.. autosummary:: + :toctree: . + + aggregate_peaks_10x + tfidf_norm + gen_wnn + knn_smooth_chrom + calculate_qc_metrics + +Tools +------------------ + +.. autosummary:: + :toctree: . + + recover_dynamics_chrom + velocity_chrom + set_velocity_genes + velocity_graph + velocity_embedding_stream + latent_time + LRT_decoupling + +Plotting +------------------ + +.. autosummary:: + :toctree: . + + likelihood_plot + pie_summary + switch_time_summary + dynamic_plot + scatter_plot