[tool.poetry]

name = "mowgli"

version = "0.4.0"

description = "Mowgli is a novel method for the integration of paired multi-omics data with any type and number of omics, combining integrative Nonnegative Matrix Factorization and Optimal Transport."

authors = ["Geert-Jan Huizing <huizing@ens.fr>"]

license = "GPL-3.0-only"

readme = "README.md"

[tool.poetry.dependencies]

python = ">=3.8,<3.12"

torch = "^1.0.0"

numpy = "^1.0.0"

mudata = "^0.2.1"

tqdm = "^4.0.0"

scanpy = "^1.0.0"

anndata = "^0.8.0"

matplotlib = "^3.0.0"

scikit-learn = "^1.0.0"

scipy = "^1.0.0"

nbsphinx = { version = "^0.8.12", optional = true }

furo = { version = "^2022.12.7", optional = true }

gprofiler-official = { version = "^1.0.0", optional = true }

leidenalg = { version = "^0.9.1", optional = true }

pre-commit = { version = "^3.1.1", optional = true }

[tool.poetry.extras]

docs = ["nbsphinx", "furo"]

dev = ["pre-commit"]

full = ["gprofiler-official", "leidenalg"]

[build-system]

requires = ["poetry-core"]

build-backend = "poetry.core.masonry.api"