#' Print method for 'corr' objects
#'
#' @param x 'corr' object
#' @param ... additional arguments
#'
#' @exportS3Method
#' @method print corr
#' @return No value
print.corr <- function(x, ...) {
if (is.null(x$r)) {
cat("NULL corr object.\n")
return(invisible())
}
if (attributes(x)$method %in% c("spearman", "pearson", "sparcc")) {
cat("Correlation table:\n")
} else {
cat("Similarity (1-Distance) table:\n")
}
cat("Table dimensions:", nrow(x$r), "rows,", ncol(x$r), "columns\n")
cat("Use method: ", attributes(x)$method, "\n")
}
#' Summary method for 'corr' objects
#'
#' @param object 'corr' object
#' @param ... Additional arguments
#'
#' @return No value
#' @exportS3Method
#' @method summary corr
#'
summary.corr <- function(object, ...) {
if (is.null(object$r)) {
cat("NULL corr object.\n")
return(invisible())
}
if (attributes(object)$method %in% c("spearman", "pearson", "sparcc")) {
cat("Correlation table:\n")
} else {
cat("Similarity (1-Distance) table:\n")
}
cat("Distribution of r:\n")
if (t_flag(object$r)) {
print(summary(object$r[upper.tri(object$r)]))
} else {
print(summary(as.vector(object$r)))
}
if (!attributes(object)$method %in% c("spearman", "pearson", "sparcc")) {
return(invisible())
}
cat("Distribution of p:\n")
if (t_flag(object$p)) {
print(summary(object$p[upper.tri(object$p)]))
} else {
print(summary(as.vector(object$p)))
}
if ("p.adjust" %in% names(object)) {
cat("Distribution of p.adjust:\n")
if (t_flag(object$p.adjust)) {
print(summary(object$p.adjust[upper.tri(object$p.adjust)]))
} else {
print(summary(as.vector(object$p.adjust)))
}
}
}
#' Print method for 'coors' objects
#'
#' @param x 'coors' object
#' @param ... additional arguments
#' @return No value
#' @exportS3Method
#' @method print coors
print.coors <- function(x, ...) {
cat("Coordinates:\n")
cat("Table dimensions:", nrow(x), "rows,", ncol(x), "columns\n")
if (!is.null(attributes(x)$curved)) cat("\nWith curved information")
}
#' Print method for 'metanet' objects
#'
#' @param x 'metanet' object
#' @param ... Additional arguments
#' @exportS3Method
#' @method print metanet
#' @return No value
print.metanet <- function(x, ...) {
pcutils::dabiao(" metanet ", print = TRUE)
print.igraph(x)
}
#' Print method for 'ggig' objects
#'
#' @param x 'ggig' object
#' @param ... Additional arguments
#'
#' @return No value
#' @exportS3Method
#' @method print ggig
print.ggig <- function(x, ...) {
pcutils::dabiao(" ggig ", print = TRUE)
pcutils::dabiao("use `plot()` to visualize ggig object.", char = " ", print = TRUE)
}
#' Print method for 'robust' objects
#' @param x 'robust' object
#' @param ... Additional arguments
#' @return No value
#' @exportS3Method
#' @method print robust
print.robust <- function(x, ...) {
pcutils::dabiao(" robust ", print = TRUE)
pcutils::dabiao("use `plot()` to visualize robust object.", char = " ", print = TRUE)
}
#' Print method for 'robustness' objects
#' @param x 'robustness' object
#' @param ... Additional arguments
#' @return No value
#' @exportS3Method
#' @method print robustness
print.robustness <- function(x, ...) {
pcutils::dabiao(" robustness ", print = TRUE)
pcutils::dabiao("use `plot()` to visualize robustness object.", char = " ", print = TRUE)
}
#' Print method for 'vulnerability' objects
#' @param x 'vulnerability' object
#' @param ... Additional arguments
#' @return No value
#' @exportS3Method
#' @method print vulnerability
print.vulnerability <- function(x, ...) {
pcutils::dabiao(" vulnerability ", print = TRUE)
pcutils::dabiao("use `plot()` to visualize vulnerability object.", char = " ", print = TRUE)
}
#' Print method for 'cohesion' objects
#' @param x 'cohesion' object
#' @param ... Additional arguments
#' @return No value
#' @exportS3Method
#' @method print cohesion
print.cohesion <- function(x, ...) {
pcutils::dabiao(" cohesion ", print = TRUE)
pcutils::dabiao("use `plot()` to visualize cohesion object.", char = " ", print = TRUE)
}