--- a +++ b/man/zp_analyse.Rd @@ -0,0 +1,58 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/6.modules.R +\name{zp_analyse} +\alias{zp_analyse} +\alias{zp_plot} +\title{Zi-Pi calculate} +\usage{ +zp_analyse(go_m, mode = 2, use_origin = TRUE) + +zp_plot(go, label = TRUE, mode = 1) +} +\arguments{ +\item{go_m}{igraph object after \code{module_detect()}} + +\item{mode}{plot style, 1~3} + +\item{use_origin}{use original_module, default:TRUE, if FALSE, use module} + +\item{go}{igraph object after zp_analyse()} + +\item{label}{show label or not} +} +\value{ +igraph + +a ggplot object +} +\description{ +Zi-Pi calculate + +Zi-Pi plot of vertexes +} +\examples{ +data("c_net") +module_detect(co_net) -> co_net_modu +zp_analyse(co_net_modu) -> co_net_modu +zp_plot(co_net_modu) +zp_plot(co_net_modu, mode = 3) + +} +\references{ +\enumerate{ +\item Guimerà, R. & Amaral, L. Functional cartography of complex metabolic networks. (2005) doi:10.1038/nature03288. +} +} +\seealso{ +Other module: +\code{\link{filter_n_module}()}, +\code{\link{get_community}()}, +\code{\link{get_module_eigen}()}, +\code{\link{get_module}()}, +\code{\link{module_detect}()}, +\code{\link{module_eigen}()}, +\code{\link{module_net}()}, +\code{\link{summary_module}()}, +\code{\link{to_module_net}()} +} +\concept{module}