--- a
+++ b/man/plot.ggig.Rd
@@ -0,0 +1,131 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/3-4.other_plot.R
+\name{plot.ggig}
+\alias{plot.ggig}
+\title{Plot a ggig}
+\usage{
+\method{plot}{ggig}(
+  x,
+  coors = NULL,
+  ...,
+  labels_num = NULL,
+  vertex_size_range = NULL,
+  edge_width_range = NULL,
+  plot_module = FALSE,
+  mark_module = FALSE,
+  mark_color = NULL,
+  mark_alpha = 0.3,
+  module_label = FALSE,
+  module_label_cex = 2,
+  module_label_color = "black",
+  module_label_just = c(0.5, 0.5),
+  legend_number = FALSE,
+  legend = TRUE,
+  legend_cex = 1,
+  legend_position = c(left_leg_x = -2, left_leg_y = 1, right_leg_x = 1.2, right_leg_y =
+    1),
+  group_legend_title = NULL,
+  group_legend_order = NULL,
+  color_legend = TRUE,
+  color_legend_order = NULL,
+  size_legend = FALSE,
+  size_legend_title = "Node Size",
+  edge_legend = TRUE,
+  edge_legend_title = "Edge type",
+  edge_legend_order = NULL,
+  width_legend = FALSE,
+  width_legend_title = "Edge width",
+  lty_legend = FALSE,
+  lty_legend_title = "Edge class",
+  lty_legend_order = NULL,
+  params_list = NULL,
+  seed = 1234
+)
+}
+\arguments{
+\item{x}{ggig object}
+
+\item{coors}{the coordinates you saved}
+
+\item{...}{additional parameters for \code{\link[igraph]{igraph.plotting}}}
+
+\item{labels_num}{show how many labels, >1 indicates number, <1 indicates fraction, "all" indicates all.}
+
+\item{vertex_size_range}{the vertex size range, e.g. c(1,10)}
+
+\item{edge_width_range}{the edge width range, e.g. c(1,10)}
+
+\item{plot_module}{logical, plot module?}
+
+\item{mark_module}{logical, mark the modules?}
+
+\item{mark_color}{mark color}
+
+\item{mark_alpha}{mark fill alpha, default 0.3}
+
+\item{module_label}{show module label?}
+
+\item{module_label_cex}{module label cex}
+
+\item{module_label_color}{module label color}
+
+\item{module_label_just}{module label just, default c(0.5,0.5)}
+
+\item{legend_number}{legend with numbers}
+
+\item{legend}{all legends}
+
+\item{legend_cex}{character expansion factor relative to current par("cex"), default: 1}
+
+\item{legend_position}{legend_position, default: c(left_leg_x=-1.9,left_leg_y=1,right_leg_x=1.2,right_leg_y=1)}
+
+\item{group_legend_title}{group_legend_title, length must same to the numbers of v_group}
+
+\item{group_legend_order}{group_legend_order vector}
+
+\item{color_legend}{logical}
+
+\item{color_legend_order}{color_legend_order vector}
+
+\item{size_legend}{logical}
+
+\item{size_legend_title}{size_legend_title}
+
+\item{edge_legend}{logical}
+
+\item{edge_legend_title}{edge_legend_title}
+
+\item{edge_legend_order}{edge_legend_order vector, e.g. c("positive","negative")}
+
+\item{width_legend}{logical}
+
+\item{width_legend_title}{width_legend_title}
+
+\item{lty_legend}{logical}
+
+\item{lty_legend_title}{lty_legend_title}
+
+\item{lty_legend_order}{lty_legend_order}
+
+\item{params_list}{a list of parameters, e.g. list(edge_legend = TRUE, lty_legend = FALSE), when the parameter is duplicated, the format argument will be used rather than the argument in params_list.}
+
+\item{seed}{random seed, default:1234, make sure each plot is the same.}
+}
+\value{
+ggplot
+}
+\description{
+Plot a ggig
+}
+\seealso{
+Other plot: 
+\code{\link{as.ggig}()},
+\code{\link{c_net_plot}()},
+\code{\link{input_cytoscape}()},
+\code{\link{input_gephi}()},
+\code{\link{netD3plot}()},
+\code{\link{olympic_rings_net}()},
+\code{\link{twocol_edgelist}()},
+\code{\link{venn_net}()}
+}
+\concept{plot}