|
a |
|
b/man/extract_sample_net.Rd |
|
|
1 |
% Generated by roxygen2: do not edit by hand |
|
|
2 |
% Please edit documentation in R/5.topological.R |
|
|
3 |
\name{extract_sample_net} |
|
|
4 |
\alias{extract_sample_net} |
|
|
5 |
\title{Extract each sample network from the whole network} |
|
|
6 |
\usage{ |
|
|
7 |
extract_sample_net( |
|
|
8 |
whole_net, |
|
|
9 |
otutab, |
|
|
10 |
threads = 1, |
|
|
11 |
save_net = FALSE, |
|
|
12 |
fast = TRUE, |
|
|
13 |
remove_negative = FALSE, |
|
|
14 |
verbose = TRUE |
|
|
15 |
) |
|
|
16 |
} |
|
|
17 |
\arguments{ |
|
|
18 |
\item{whole_net}{the whole network} |
|
|
19 |
|
|
|
20 |
\item{otutab}{otutab, columns are samples, these columns will be extract} |
|
|
21 |
|
|
|
22 |
\item{threads}{threads, default: 1} |
|
|
23 |
|
|
|
24 |
\item{save_net}{should save these sub_nets? FALSE or a filename} |
|
|
25 |
|
|
|
26 |
\item{fast}{less indexes for faster calculate ?} |
|
|
27 |
|
|
|
28 |
\item{remove_negative}{remove negative edge or not? default: FALSE} |
|
|
29 |
|
|
|
30 |
\item{verbose}{verbose} |
|
|
31 |
} |
|
|
32 |
\value{ |
|
|
33 |
a dataframe contains all sub_net parameters |
|
|
34 |
} |
|
|
35 |
\description{ |
|
|
36 |
Extract each sample network from the whole network |
|
|
37 |
} |
|
|
38 |
\examples{ |
|
|
39 |
data(otutab, package = "pcutils") |
|
|
40 |
extract_sample_net(co_net, otutab) -> sub_net_pars |
|
|
41 |
} |
|
|
42 |
\seealso{ |
|
|
43 |
Other topological: |
|
|
44 |
\code{\link{fit_power}()}, |
|
|
45 |
\code{\link{get_group_skeleton}()}, |
|
|
46 |
\code{\link{links_stat}()}, |
|
|
47 |
\code{\link{nc}()}, |
|
|
48 |
\code{\link{net_par}()}, |
|
|
49 |
\code{\link{rand_net_par}()}, |
|
|
50 |
\code{\link{rand_net}()}, |
|
|
51 |
\code{\link{smallworldness}()} |
|
|
52 |
} |
|
|
53 |
\concept{topological} |