% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/1.calculate.R

\name{cal_sim}

\alias{cal_sim}

\title{Calculate similarity for one t(otutab)}

\usage{

cal_sim(totu, totu2 = NULL, method = "bray")

}

\arguments{

\item{totu}{t(otutab), row are samples, column are features.}

\item{totu2}{t(otutab) or NULL, row are samples, column are features.}

\item{method}{Dissimilarity index, see \code{\link[vegan]{vegdist}}.}

}

\value{

similarity = 1-distance

}

\description{

Calculate similarity for one t(otutab)

}

\examples{

if (requireNamespace("vegan")) {

  data("otutab", package = "pcutils")

  t(otutab) -> totu

  cal_sim(totu) -> sim_corr

}

}

\seealso{

\code{\link[vegan]{vegdist}}

Other calculate: 

\code{\link{c_net_calculate}()},

\code{\link{fast_cor}()},

\code{\link{p.adjust.table}()},

\code{\link{read_corr}()}

}

\concept{calculate}