--- a
+++ b/man/cal_sim.Rd
@@ -0,0 +1,38 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/1.calculate.R
+\name{cal_sim}
+\alias{cal_sim}
+\title{Calculate similarity for one t(otutab)}
+\usage{
+cal_sim(totu, totu2 = NULL, method = "bray")
+}
+\arguments{
+\item{totu}{t(otutab), row are samples, column are features.}
+
+\item{totu2}{t(otutab) or NULL, row are samples, column are features.}
+
+\item{method}{Dissimilarity index, see \code{\link[vegan]{vegdist}}.}
+}
+\value{
+similarity = 1-distance
+}
+\description{
+Calculate similarity for one t(otutab)
+}
+\examples{
+if (requireNamespace("vegan")) {
+  data("otutab", package = "pcutils")
+  t(otutab) -> totu
+  cal_sim(totu) -> sim_corr
+}
+}
+\seealso{
+\code{\link[vegan]{vegdist}}
+
+Other calculate: 
+\code{\link{c_net_calculate}()},
+\code{\link{fast_cor}()},
+\code{\link{p.adjust.table}()},
+\code{\link{read_corr}()}
+}
+\concept{calculate}