% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/2-2.manipulate.R

\name{c_net_set}

\alias{c_net_set}

\title{Set basic attributes from totu table}

\usage{

c_net_set(

  go,

  ...,

  vertex_group = "v_group",

  vertex_class = "v_class",

  vertex_size = "size",

  edge_type = "e_type",

  edge_class = "e_class",

  edge_width = "width",

  node_break = 5,

  edge_break = 5,

  initialize = TRUE

)

}

\arguments{

\item{go}{metanet an igraph object}

\item{...}{some data.frames to annotate go}

\item{vertex_group}{choose which column to be vertex_group (map to vertex_shape)}

\item{vertex_class}{choose which column to be vertex_class (map to vertex_color)}

\item{vertex_size}{choose which column to be vertex_size (map to vertex_size)}

\item{edge_type}{choose which column to be edge_type (map to edge_color)}

\item{edge_class}{choose which column to be edge_class (map to edge_linetype)}

\item{edge_width}{choose which column to be edge_width (map to edge_width)}

\item{node_break}{node_break if v_class is numeric, default: 5}

\item{edge_break}{edge_break if e_type is numeric, default: 5}

\item{initialize}{initialize, default: TRUE}

}

\value{

a metanet object

}

\description{

Set basic attributes from totu table

}

\examples{

data("otutab", package = "pcutils")

t(otutab) -> totu

metadata[, 3:10] -> env

data("c_net")

co_net <- c_net_set(co_net, taxonomy, data.frame("Abundance" = colSums(totu)),

  vertex_class = "Phylum", vertex_size = "Abundance"

)

co_net2 <- c_net_set(co_net2, taxonomy, data.frame(name = colnames(env), env = colnames(env)),

  vertex_class = c("Phylum", "env")

)

co_net2 <- c_net_set(co_net2, data.frame("Abundance" = colSums(totu)), vertex_size = "Abundance")

}

\seealso{

Other build: 

\code{\link{c_net_build}()},

\code{\link{c_net_from_edgelist}()},

\code{\link{c_net_update}()},

\code{\link{multi_net_build}()}

}

\concept{build}