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b/man/c_net_set.Rd |
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% Generated by roxygen2: do not edit by hand |
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% Please edit documentation in R/2-2.manipulate.R |
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\name{c_net_set} |
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\alias{c_net_set} |
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\title{Set basic attributes from totu table} |
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\usage{ |
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c_net_set( |
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go, |
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..., |
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vertex_group = "v_group", |
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vertex_class = "v_class", |
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vertex_size = "size", |
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edge_type = "e_type", |
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edge_class = "e_class", |
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edge_width = "width", |
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node_break = 5, |
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edge_break = 5, |
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initialize = TRUE |
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) |
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} |
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\arguments{ |
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\item{go}{metanet an igraph object} |
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\item{...}{some data.frames to annotate go} |
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\item{vertex_group}{choose which column to be vertex_group (map to vertex_shape)} |
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\item{vertex_class}{choose which column to be vertex_class (map to vertex_color)} |
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\item{vertex_size}{choose which column to be vertex_size (map to vertex_size)} |
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\item{edge_type}{choose which column to be edge_type (map to edge_color)} |
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\item{edge_class}{choose which column to be edge_class (map to edge_linetype)} |
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\item{edge_width}{choose which column to be edge_width (map to edge_width)} |
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\item{node_break}{node_break if v_class is numeric, default: 5} |
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\item{edge_break}{edge_break if e_type is numeric, default: 5} |
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\item{initialize}{initialize, default: TRUE} |
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} |
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\value{ |
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a metanet object |
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} |
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\description{ |
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Set basic attributes from totu table |
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} |
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\examples{ |
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data("otutab", package = "pcutils") |
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t(otutab) -> totu |
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metadata[, 3:10] -> env |
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data("c_net") |
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co_net <- c_net_set(co_net, taxonomy, data.frame("Abundance" = colSums(totu)), |
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vertex_class = "Phylum", vertex_size = "Abundance" |
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) |
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co_net2 <- c_net_set(co_net2, taxonomy, data.frame(name = colnames(env), env = colnames(env)), |
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vertex_class = c("Phylum", "env") |
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) |
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co_net2 <- c_net_set(co_net2, data.frame("Abundance" = colSums(totu)), vertex_size = "Abundance") |
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} |
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\seealso{ |
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Other build: |
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\code{\link{c_net_build}()}, |
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\code{\link{c_net_from_edgelist}()}, |
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\code{\link{c_net_update}()}, |
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\code{\link{multi_net_build}()} |
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} |
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\concept{build} |