Diff of /man/c_net_build.Rd [000000] .. [13df9a]

Switch to side-by-side view

--- a
+++ b/man/c_net_build.Rd
@@ -0,0 +1,49 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/2-1.build.R
+\name{c_net_build}
+\alias{c_net_build}
+\title{Construct a metanet from a corr object}
+\usage{
+c_net_build(
+  corr,
+  r_threshold = 0.6,
+  p_threshold = 0.05,
+  use_p_adj = TRUE,
+  delete_single = TRUE
+)
+}
+\arguments{
+\item{corr}{corr object from \code{c_net_calculate()} or \code{read_corr()}.}
+
+\item{r_threshold}{r_threshold (default: >0.6).}
+
+\item{p_threshold}{p_threshold (default: <0.05).}
+
+\item{use_p_adj}{use the p.adjust instead of p.value (default: TRUE), if p.adjust not in the corr object, use p.value.}
+
+\item{delete_single}{should delete single vertexes?}
+}
+\value{
+an metanet object
+}
+\description{
+Construct a metanet from a corr object
+}
+\examples{
+data("otutab", package = "pcutils")
+t(otutab) -> totu
+metadata[, 3:10] -> env
+c_net_calculate(totu) -> corr
+c_net_build(corr, r_threshold = 0.65) -> co_net
+
+c_net_calculate(totu, env) -> corr2
+c_net_build(corr2) -> co_net2
+}
+\seealso{
+Other build: 
+\code{\link{c_net_from_edgelist}()},
+\code{\link{c_net_set}()},
+\code{\link{c_net_update}()},
+\code{\link{multi_net_build}()}
+}
+\concept{build}