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b/man/c_net_build.Rd |
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% Generated by roxygen2: do not edit by hand |
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% Please edit documentation in R/2-1.build.R |
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\name{c_net_build} |
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\alias{c_net_build} |
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\title{Construct a metanet from a corr object} |
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\usage{ |
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c_net_build( |
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corr, |
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r_threshold = 0.6, |
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p_threshold = 0.05, |
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use_p_adj = TRUE, |
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delete_single = TRUE |
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) |
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} |
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\arguments{ |
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\item{corr}{corr object from \code{c_net_calculate()} or \code{read_corr()}.} |
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\item{r_threshold}{r_threshold (default: >0.6).} |
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\item{p_threshold}{p_threshold (default: <0.05).} |
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\item{use_p_adj}{use the p.adjust instead of p.value (default: TRUE), if p.adjust not in the corr object, use p.value.} |
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\item{delete_single}{should delete single vertexes?} |
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} |
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\value{ |
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an metanet object |
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} |
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\description{ |
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Construct a metanet from a corr object |
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} |
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\examples{ |
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data("otutab", package = "pcutils") |
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t(otutab) -> totu |
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metadata[, 3:10] -> env |
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c_net_calculate(totu) -> corr |
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c_net_build(corr, r_threshold = 0.65) -> co_net |
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c_net_calculate(totu, env) -> corr2 |
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c_net_build(corr2) -> co_net2 |
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} |
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\seealso{ |
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Other build: |
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\code{\link{c_net_from_edgelist}()}, |
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\code{\link{c_net_set}()}, |
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\code{\link{c_net_update}()}, |
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\code{\link{multi_net_build}()} |
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} |
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\concept{build} |