--- a
+++ b/man/RMT_threshold.Rd
@@ -0,0 +1,58 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/2-3.RMT.R
+\name{RMT_threshold}
+\alias{RMT_threshold}
+\alias{rmt}
+\title{Get RMT threshold for a correlation matrix}
+\usage{
+RMT_threshold(
+  occor.r,
+  out_dir,
+  min_threshold = 0.5,
+  max_threshold = 0.8,
+  step = 0.02,
+  gif = FALSE,
+  verbose = FALSE
+)
+
+rmt(occor.r, min_threshold = 0.5, max_threshold = 0.85, step = 0.01)
+}
+\arguments{
+\item{occor.r}{a corr object or a correlation matrix}
+
+\item{out_dir}{output dir}
+
+\item{min_threshold}{min_threshold}
+
+\item{max_threshold}{max_threshold}
+
+\item{step}{step}
+
+\item{gif}{render a .gif file?}
+
+\item{verbose}{verbose}
+}
+\value{
+a r-threshold
+
+recommend threshold
+}
+\description{
+Get RMT threshold for a correlation matrix
+
+Get RMT threshold for a correlation matrix roughly
+}
+\examples{
+\donttest{
+data(otutab, package = "pcutils")
+t(otutab) -> totu
+c_net_calculate(totu) -> corr
+rmt(corr)
+# recommend: 0.69
+c_net_build(corr, r_threshold = 0.69) -> co_net_rmt
+}
+}
+\references{
+J. Zhou, Y. Deng, FALSE. Luo, Z. He, Q. Tu, X. Zhi, (2010) Functional Molecular Ecological Networks, doi:10.1128/mBio.00169-10.
+\url{https://matstat.org/content_en/RMT/RMThreshold_Intro.pdf}
+}