--- a +++ b/R/print.R @@ -0,0 +1,150 @@ +#' Print method for 'corr' objects +#' +#' @param x 'corr' object +#' @param ... additional arguments +#' +#' @exportS3Method +#' @method print corr +#' @return No value +print.corr <- function(x, ...) { + if (is.null(x$r)) { + cat("NULL corr object.\n") + return(invisible()) + } + if (attributes(x)$method %in% c("spearman", "pearson", "sparcc")) { + cat("Correlation table:\n") + } else { + cat("Similarity (1-Distance) table:\n") + } + cat("Table dimensions:", nrow(x$r), "rows,", ncol(x$r), "columns\n") + cat("Use method: ", attributes(x)$method, "\n") +} + +#' Summary method for 'corr' objects +#' +#' @param object 'corr' object +#' @param ... Additional arguments +#' +#' @return No value +#' @exportS3Method +#' @method summary corr +#' +summary.corr <- function(object, ...) { + if (is.null(object$r)) { + cat("NULL corr object.\n") + return(invisible()) + } + if (attributes(object)$method %in% c("spearman", "pearson", "sparcc")) { + cat("Correlation table:\n") + } else { + cat("Similarity (1-Distance) table:\n") + } + + cat("Distribution of r:\n") + if (t_flag(object$r)) { + print(summary(object$r[upper.tri(object$r)])) + } else { + print(summary(as.vector(object$r))) + } + + if (!attributes(object)$method %in% c("spearman", "pearson", "sparcc")) { + return(invisible()) + } + cat("Distribution of p:\n") + if (t_flag(object$p)) { + print(summary(object$p[upper.tri(object$p)])) + } else { + print(summary(as.vector(object$p))) + } + if ("p.adjust" %in% names(object)) { + cat("Distribution of p.adjust:\n") + if (t_flag(object$p.adjust)) { + print(summary(object$p.adjust[upper.tri(object$p.adjust)])) + } else { + print(summary(as.vector(object$p.adjust))) + } + } +} + +#' Print method for 'coors' objects +#' +#' @param x 'coors' object +#' @param ... additional arguments +#' @return No value +#' @exportS3Method +#' @method print coors +print.coors <- function(x, ...) { + cat("Coordinates:\n") + cat("Table dimensions:", nrow(x), "rows,", ncol(x), "columns\n") + if (!is.null(attributes(x)$curved)) cat("\nWith curved information") +} + + +#' Print method for 'metanet' objects +#' +#' @param x 'metanet' object +#' @param ... Additional arguments +#' @exportS3Method +#' @method print metanet +#' @return No value +print.metanet <- function(x, ...) { + pcutils::dabiao(" metanet ", print = TRUE) + print.igraph(x) +} + +#' Print method for 'ggig' objects +#' +#' @param x 'ggig' object +#' @param ... Additional arguments +#' +#' @return No value +#' @exportS3Method +#' @method print ggig +print.ggig <- function(x, ...) { + pcutils::dabiao(" ggig ", print = TRUE) + pcutils::dabiao("use `plot()` to visualize ggig object.", char = " ", print = TRUE) +} + +#' Print method for 'robust' objects +#' @param x 'robust' object +#' @param ... Additional arguments +#' @return No value +#' @exportS3Method +#' @method print robust +print.robust <- function(x, ...) { + pcutils::dabiao(" robust ", print = TRUE) + pcutils::dabiao("use `plot()` to visualize robust object.", char = " ", print = TRUE) +} + +#' Print method for 'robustness' objects +#' @param x 'robustness' object +#' @param ... Additional arguments +#' @return No value +#' @exportS3Method +#' @method print robustness +print.robustness <- function(x, ...) { + pcutils::dabiao(" robustness ", print = TRUE) + pcutils::dabiao("use `plot()` to visualize robustness object.", char = " ", print = TRUE) +} + +#' Print method for 'vulnerability' objects +#' @param x 'vulnerability' object +#' @param ... Additional arguments +#' @return No value +#' @exportS3Method +#' @method print vulnerability +print.vulnerability <- function(x, ...) { + pcutils::dabiao(" vulnerability ", print = TRUE) + pcutils::dabiao("use `plot()` to visualize vulnerability object.", char = " ", print = TRUE) +} + +#' Print method for 'cohesion' objects +#' @param x 'cohesion' object +#' @param ... Additional arguments +#' @return No value +#' @exportS3Method +#' @method print cohesion +print.cohesion <- function(x, ...) { + pcutils::dabiao(" cohesion ", print = TRUE) + pcutils::dabiao("use `plot()` to visualize cohesion object.", char = " ", print = TRUE) +}