--- a +++ b/NAMESPACE @@ -0,0 +1,178 @@ +# Generated by roxygen2: do not edit by hand + +S3method(plot,cohesion) +S3method(plot,ggig) +S3method(plot,metanet) +S3method(plot,rmt_res) +S3method(plot,robust) +S3method(plot,robustness) +S3method(plot,vulnerability) +S3method(print,cohesion) +S3method(print,coors) +S3method(print,corr) +S3method(print,ggig) +S3method(print,metanet) +S3method(print,robust) +S3method(print,robustness) +S3method(print,vulnerability) +S3method(summary,corr) +export("%<>%") +export("%>%") +export(Cohesion) +export(RMT_threshold) +export(anno_edge) +export(anno_vertex) +export(as.ggig) +export(as.metanet) +export(as_arc) +export(as_circle_tree) +export(as_coors) +export(as_line) +export(as_multi_layer) +export(as_poly_sector) +export(as_polyarc) +export(as_polycircle) +export(as_polygon) +export(c_net_annotate) +export(c_net_build) +export(c_net_cal) +export(c_net_calculate) +export(c_net_filter) +export(c_net_from_edgelist) +export(c_net_index) +export(c_net_lay) +export(c_net_layout) +export(c_net_load) +export(c_net_module) +export(c_net_plot) +export(c_net_save) +export(c_net_set) +export(c_net_stability) +export(c_net_union) +export(c_net_update) +export(cal_sim) +export(check_tabs) +export(clean_igraph) +export(clean_multi_edge_metanet) +export(combine_n_module) +export(compare_rand) +export(df2net_tree) +export(extract_sample_net) +export(fast_cor) +export(filter_n_module) +export(fit_power) +export(g_layout) +export(g_layout_backbone) +export(g_layout_circlepack) +export(g_layout_multi_layer) +export(g_layout_nice) +export(g_layout_poly_sector) +export(g_layout_polyarc) +export(g_layout_polycircle) +export(g_layout_polygon) +export(g_layout_stress) +export(g_layout_treemap) +export(get_community) +export(get_e) +export(get_group_skeleton) +export(get_module) +export(get_module_eigen) +export(get_n) +export(get_v) +export(input_cytoscape) +export(input_gephi) +export(is_metanet) +export(links_stat) +export(module_detect) +export(module_eigen) +export(module_expression) +export(module_net) +export(multi_net_build) +export(nc) +export(netD3plot) +export(net_par) +export(olympic_rings_net) +export(p.adjust.table) +export(plot_module_tree) +export(rand_net) +export(rand_net_par) +export(read_corr) +export(rmt) +export(robust_test) +export(robustness) +export(save_corr) +export(show_MetaNet_logo) +export(skeleton_plot) +export(smallworldness) +export(spatstat_layout) +export(summ_2col) +export(summary_module) +export(to_module_net) +export(transform_coors) +export(twocol_edgelist) +export(venn_net) +export(vulnerability) +export(zp_analyse) +export(zp_plot) +import(ggplot2) +import(igraph) +importFrom(dplyr,arrange) +importFrom(dplyr,count) +importFrom(dplyr,filter) +importFrom(dplyr,group_by) +importFrom(dplyr,left_join) +importFrom(dplyr,mutate) +importFrom(dplyr,pull) +importFrom(dplyr,rename) +importFrom(dplyr,select) +importFrom(dplyr,summarise) +importFrom(graphics,hist) +importFrom(graphics,legend) +importFrom(graphics,par) +importFrom(graphics,symbols) +importFrom(graphics,text) +importFrom(igraph,E) +importFrom(igraph,V) +importFrom(magrittr,"%<>%") +importFrom(magrittr,"%>%") +importFrom(pcutils,change_fac_lev) +importFrom(pcutils,get_cols) +importFrom(pcutils,guolv) +importFrom(pcutils,hebing) +importFrom(pcutils,lib_ps) +importFrom(pcutils,mmscale) +importFrom(pcutils,tidai) +importFrom(pcutils,trans) +importFrom(pcutils,update_param) +importFrom(reshape2,acast) +importFrom(reshape2,melt) +importFrom(stats,aggregate) +importFrom(stats,approx) +importFrom(stats,coef) +importFrom(stats,coefficients) +importFrom(stats,cor) +importFrom(stats,density) +importFrom(stats,fitted) +importFrom(stats,formula) +importFrom(stats,kmeans) +importFrom(stats,ks.test) +importFrom(stats,lm) +importFrom(stats,median) +importFrom(stats,na.omit) +importFrom(stats,p.adjust) +importFrom(stats,pt) +importFrom(stats,relevel) +importFrom(stats,runif) +importFrom(stats,sd) +importFrom(stats,setNames) +importFrom(stats,smooth.spline) +importFrom(stats,time) +importFrom(stats,var) +importFrom(tibble,column_to_rownames) +importFrom(tibble,rownames_to_column) +importFrom(utils,combn) +importFrom(utils,data) +importFrom(utils,head) +importFrom(utils,packageName) +importFrom(utils,tail) +importFrom(utils,write.csv)