--- a
+++ b/man/nemo.affinity.graph.Rd
@@ -0,0 +1,29 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/getNEMO.R
+\name{nemo.affinity.graph}
+\alias{nemo.affinity.graph}
+\title{NEMO affinity graph}
+\usage{
+nemo.affinity.graph(raw.data, k = NA, NUM.NEIGHBORS.RATIO = 6)
+}
+\arguments{
+\item{raw.data}{A list of the data to be clustered, where each an entry is a matrix of features x samples.}
+
+\item{k}{The number of neighbors to use for each omic. It can either be a number, a list of numbers
+or NA. If it is a number, this is the number of neighbors used for all omics. If this is a list,
+the number of neighbors are taken for each omic from that list. If it is NA, each omic chooses the
+number of neighbors to be the number of samples divided by NUM.NEIGHBORS.RATIO.}
+}
+\value{
+A single matrix measuring similarity between the samples across all omics.
+}
+\description{
+Constructs a single affinity graph measuring similarity across different omics.
+}
+\references{
+Rappoport N, Shamir R (2019). NEMO: cancer subtyping by integration of partial multi-omic data. Bioinformatics, 35(18):3348-3356.
+}
+\author{
+Nimrod Rappoport
+}
+\keyword{internal}