--- a
+++ b/man/getPINSPlus.Rd
@@ -0,0 +1,49 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/getPINSPlus.R
+\name{getPINSPlus}
+\alias{getPINSPlus}
+\title{Get subtypes from PINSPlus}
+\usage{
+getPINSPlus(
+  data = NULL,
+  N.clust = NULL,
+  type = rep("gaussian", length(data)),
+  norMethod = "none",
+  clusteringMethod = "kmeans",
+  iterMin = 50,
+  iterMax = 500
+)
+}
+\arguments{
+\item{data}{List of matrices.}
+
+\item{N.clust}{Number of clusters}
+
+\item{type}{Data type corresponding to the list of matrics, which can be gaussian, binomial or possion.}
+
+\item{norMethod}{A string vector indicate the normalization method for consensus clustering.}
+
+\item{clusteringMethod}{The name of built-in clustering algorithm that PerturbationClustering will use. Currently supported algorithm are kmeans, pam and hclust. Default value is "kmeans".}
+
+\item{iterMin}{The minimum number of iterations. Default value is 50}
+
+\item{iterMax}{The maximum number of iterations. Default value is 500.}
+}
+\value{
+A list with the following components:
+
+        \code{fit}       an object returned by \link[PINSPlus]{PerturbationClustering}.
+
+        \code{clust.res} a data.frame storing sample ID and corresponding clusters.
+
+        \code{mo.method} a string value indicating the method used for multi-omics integrative clustering.
+}
+\description{
+This function wraps the PINSPlus (Perturbation Clustering for data INtegration and disease Subtyping) algorithm and provides standard output for `getMoHeatmap()` and `getConsensusMOIC()`.
+}
+\examples{
+# There is no example and please refer to vignette.
+}
+\references{
+Nguyen H, Shrestha S, Draghici S, Nguyen T (2019). PINSPlus: a tool for tumor subtype discovery in integrated genomic data. Bioinformatics, 35(16):2843-2846.
+}