--- a
+++ b/man/getNEMO.Rd
@@ -0,0 +1,40 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/getNEMO.R
+\name{getNEMO}
+\alias{getNEMO}
+\title{Get subtypes from NEMO}
+\usage{
+getNEMO(
+  data = NULL,
+  N.clust = NULL,
+  type = rep("gaussian", length(data)),
+  num.neighbors = NA
+)
+}
+\arguments{
+\item{data}{List of matrices.}
+
+\item{N.clust}{Number of clusters.}
+
+\item{type}{Data type corresponding to the list of matrics, which can be gaussian, binomial or possion.}
+
+\item{num.neighbors}{The number of neighbors to use for each omic.}
+}
+\value{
+A list with the following components:
+
+        \code{fit}       an object returned by \link[NEMO]{nemo.clustering}.
+
+        \code{clust.res} a data.frame storing sample ID and corresponding clusters.
+
+        \code{mo.method} a string value indicating the method used for multi-omics integrative clustering.
+}
+\description{
+This function wraps the NEMO (Neighborhood based multi-omics clustering) algorithm and provides standard output for `getMoHeatmap()` and `getConsensusMOIC()`.
+}
+\examples{
+# There is no example and please refer to vignette.
+}
+\references{
+Rappoport N, Shamir R (2019). NEMO: cancer subtyping by integration of partial multi-omic data. Bioinformatics, 35(18):3348-3356.
+}