Datasets
Models
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/inst/extdata/gene sets of interest.gmt
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| a | b/inst/extdata/gene sets of interest.gmt | ||
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| 1 | Adhesion na ALCAM CEACAM1 CEACAM6 CEACAM8 EPCAM ICAM1 ICAM2 ICAM3 ICAM4 ITGA1 ITGA2 ITGA2B ITGA4 ITGA5 ITGA6 ITGAE ITGAL ITGAM ITGAX ITGB1 ITGB2 ITGB3 ITGB4 MCAM VCAM1 |
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| 2 | Antigen_Processing na CD1E CD8A HLA-A HLA-B HLA-C HLA-DMA HLA-DMB HLA-DOB HLA-DPA1 HLA-DPB1 HLA-DQA1 HLA-DQB1 HLA-DRA HLA-DRB3 HLA-DRB4 MR1 PSMB7 PSMB9 TAP1 TAP2 TAPBP THBS1 |
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| 3 | B-Cell_Functions na CD8A ITGA1 ADA AICDA BLK CCR1 CCR4 CCR5 CD19 CD1C CD1D CD2 CD27 CD274 CD38 CD3E CD3G CD47 CD5 CD7 CD70 CD79B CD80 CD86 CD8B CTLA4 CX3CL1 CXCL10 CXCL11 CXCL9 CXCR3 CXCR4 CXCR5 DPP4 EGR1 EOMES F2RL1 FAS FOXP3 ICOSLG IDO1 IFNG IFNGR1 IL11 IL12A IL12B IL12RB1 IL12RB2 IL13 IL13RA1 IL13RA2 IL18 IL18R1 IL18RAP IL2 IL3 IL4 IL4R IL5 IRF1 IRF4 LAG3 LCK LCP1 LILRB1 MAF MS4A1 PSEN1 PSEN2 PTPRC RAG1 RPS6 SLC11A1 SOCS1 STAT4 STAT6 TBX21 TIGIT TNFRSF14 TNFSF14 TNFSF18 TP53 |
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| 4 | Cell_Cycle na CXCR4 THBS1 ABL1 ATM BAX BCL2 BID BIRC5 CASP3 CCND3 CDKN1A NUP107 TNFSF10 |
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| 5 | Cell_Functions na CXCR4 CD8A ITGA1 ADA AICDA BLK CCR1 CCR4 CCR5 CD19 CD1C CD1D CD2 CD27 CD274 CD38 CD3E CD3G CD47 CD5 CD7 CD70 CD79B CD80 CD86 CD8B CTLA4 CX3CL1 CXCL10 CXCL11 CXCL9 CXCR3 CXCR5 DPP4 EGR1 EOMES F2RL1 FAS FOXP3 ICOSLG IDO1 IFNG IFNGR1 IL11 IL12A IL12B IL12RB1 IL12RB2 IL13 IL13RA1 IL13RA2 IL18 IL18R1 IL18RAP IL2 IL3 IL4 IL4R IL5 IRF1 IRF4 LAG3 LCK LCP1 LILRB1 MAF MS4A1 PSEN1 PSEN2 PTPRC RAG1 RPS6 SLC11A1 SOCS1 STAT4 STAT6 TBX21 TIGIT TNFRSF14 TNFSF14 TNFSF18 TP53 EPCAM ADORA2A AKT3 ANP32B BATF BTLA CD1A CD1B CD209 CD6 CD68 CHIT1 CR2 CSF3 DOCK9 EWSR1 F13A1 FEZ1 FUT5 GATA3 GTF3C1 GZMA GZMB GZMH GZMK GZMM HAVCR2 HSD11B1 ICOS IL17RA IL21R IL3RA KIR2DL1 KIR2DL3 KIR2DS1 KIR3DL1 KIR3DL2 KIR3DL3 KIR3DS1 KIT KLRB1 KLRC1 KLRC2 KLRD1 KLRF1 KLRG1 KLRK1 LAIR2 LAMP3 LIF LTK MME MPPED1 MSR1 NCR1 NEFL NRP1 OSM PDGFC PLA2G6 PMCH PTGDR2 REPS1 RORC RRAD SMAD2 SMPD3 SYT17 TARP TNFRSF17 TPSAB1 USP9Y ZNF205 |
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| 6 | Chemokines na CXCR4 CCR1 CCR4 CX3CL1 CXCL10 CXCL11 CXCL9 CXCR3 CXCR5 IL13RA2 IRF1 STAT4 STAT6 KLRB1 CEACAM8 A2M C1QBP CCL1 CCL11 CCL13 CCL14 CCL15 CCL16 CCL17 CCL18 CCL19 CCL2 CCL20 CCL21 CCL22 CCL23 CCL24 CCL25 CCL26 CCL27 CCL28 CCL3 CCL4 CCL5 CCL7 CCL8 CCR3 CCR7 CCRL2 CKLF CMKLR1 CSF2RB CX3CR1 CXCL1 CXCL12 CXCL13 CXCL14 CXCL16 CXCL2 CXCL3 CXCL5 CXCL6 CXCL8 CXCR1 CXCR2 CXCR6 IFI16 IFI27 IFI35 IFIT1 IFIT2 IFNAR2 IFNL2 IL11RA IL15RA IL17B IL17RB IL19 IL1B IL22RA1 IL22RA2 IL2RG IL32 IL6ST ILF3 IRF2 IRF8 LTA LTBR MS4A2 PPBP PSMB8 STAT1 STAT2 STAT3 STAT5B TNFRSF13B TNFRSF1A TNFRSF1B TNFSF12 TNFSF15 TNFSF4 XCL2 XCR1 |
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| 7 | Complement na CCL25 C1QA C1QB C1R C1S C2 C4B C4BPA C5 C6 C7 C8A C8B C8G C9 |
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| 8 | Cytokines na CCR1 CCR4 CXCL10 CCL5 CXCL8 IL1B CCR5 CD70 FOXP3 IDO1 IFNG IL11 IL12A IL12B IL12RB2 IL13 IL13RA1 IL2 IL4R IL5 TNFSF14 TNFSF10 HLA-DOB CCL3L1 CCR2 CSF2 CSF3R EBI3 FLT3LG IFNL1 IL10RA IL17A IL1A IL1R2 IL1RN IL21 IL22 IL23R IL24 IL26 IL2RB IL5RA IL6R IL7R IL9 JAK1 JAK2 JAK3 LTB NOD2 OAS3 PTGS2 SPP1 TNFSF8 TYK2 VEGFA |
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| 9 | Cytotoxicity na GZMA GZMB GZMH GZMK GZMM HLA-A HLA-B HLA-C GNLY PRF1 |
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| 10 | Interleukins na CXCL8 IL1B IFNG IL11 IL12A IL12B IL13 IL5 IFNL1 IL17A IL1A IL1RN IL21 IL24 IL26 IL17B IL19 IL32 IL18 IL4 IFNA1 IFNA17 IFNA2 IFNA7 IFNA8 IL10 IL15 IL16 IL17F IL23A IL25 IL27 IL34 IL6 IL7 TGFB1 TGFB2 TNF |
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| 11 | Leukocyte_Functions na CD2 VEGFA FUT7 HCK SH2D1B THBD |
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| 12 | Macrophage_Functions na CSF2 LBP PRKCE SBNO2 SYK TICAM1 |
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| 13 | Microglial_Functions na TLR1 TLR3 TLR4 TLR7 CX3CR1 |
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| 14 | NK_Cell_Functions na IL12A IL12B KLRB1 KIR2DL1 KIR2DL3 KIR2DS1 KIR3DL1 KIR3DL2 KIR3DL3 KIR3DS1 KLRC1 KLRC2 KLRD1 KLRF1 KLRG1 KLRK1 NCR1 |
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| 15 | Pathogen_Defense na CXCL8 IL1B GNLY PRF1 CXCL10 OAS3 TYK2 CCL22 CD8A CTSG IFNAR1 PRG2 |
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| 16 | Regulation na CXCL8 IL1B CXCL10 TYK2 CTSG IL12A KIR2DL1 KIR2DL3 KIR2DS1 KIR3DL1 KIR3DL2 KIR3DS1 KLRC1 KLRD1 KLRG1 KLRK1 CSF2 IL5 IL4 IL15 TGFB1 HLA-A HLA-B HLA-C CCR1 CCR4 IL2 TNFSF14 TNFSF10 JAK1 JAK2 JAK3 CXCR4 CXCL9 IRF1 STAT4 STAT6 CCL16 CCL19 CCL21 CCL23 CCL24 CCL3 CCL4 CCL8 CCR7 CXCL1 CXCL2 CXCL3 CXCL6 CXCR1 CXCR2 IRF2 IRF8 STAT1 STAT2 STAT3 STAT5B CD19 CD38 CD3G CD47 CD5 CD7 CD80 CD86 CD8B DPP4 FAS ICOSLG IL3 IRF4 LAG3 LCK LILRB1 TBX21 TNFRSF14 THBS1 ABL1 BAX BID CASP3 CDKN1A HLA-DMA ICAM1 ICAM2 ICAM3 ICAM4 ITGA4 ITGAL ITGB1 ITGB2 VCAM1 AMBP AMICA1 BCL6 C3 C3AR1 CARD11 CD160 CD200 CD247 CD276 CD34 CD3D CD3EAP CD40 CD40LG CD81 CD96 CDH1 CMA1 COL3A1 EGR2 ELANE FCER1G FCGR2B FCGR3A HLA-E HLA-G HMGB1 IFITM1 IL2RA INPP5D LILRA1 LILRB2 LILRB3 LYN MICA MICB NFATC1 NFATC2 NFATC3 NOTCH1 PDCD1 PLA2G1B PVR REL RELB RORA RUNX1 RUNX3 SELE SELL SH2B2 SMAD3 SPINK5 SPN TAL1 TCF7 TNFRSF13C TNFSF13 TNFSF13B ULBP2 |
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| 17 | Senescence na ABL1 CDKN1A EGR1 CD44 ETS1 FN1 HRAS IGF1R IRF5 PLAU PRKCD SERPINB2 |
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| 18 | T-Cell_Functions na EGR1 CXCL10 IL12A IL5 IL4 CCR1 CCR4 IL2 TNFSF14 CXCR4 CXCL9 IRF1 STAT4 STAT6 CD19 CD38 CD3G CD47 CD5 CD7 CD80 CD86 CD8B DPP4 FAS ICOSLG IL3 IRF4 LAG3 LCK LILRB1 TBX21 TNFRSF14 CD8A IL12B CD2 IFNG IL11 IL13 IL18 CCR5 CD70 FOXP3 IDO1 IL12RB2 IL13RA1 IL4R CX3CL1 CXCL11 CXCR3 CXCR5 IL13RA2 ITGA1 ADA AICDA BLK CD1C CD1D CD27 CD274 CD3E CD79B CTLA4 EOMES F2RL1 IFNGR1 IL12RB1 IL18R1 IL18RAP LCP1 MAF MS4A1 PSEN1 PSEN2 PTPRC RAG1 RPS6 SLC11A1 SOCS1 TIGIT TNFSF18 TP53 |
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| 19 | TLR na TLR1 TLR3 TLR4 TLR7 MYD88 TLR10 TLR2 TLR5 TLR6 TLR8 TLR9 |
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| 20 | TNF_Superfamily na TNFSF14 FAS TNFRSF14 CD70 TNFSF18 TNFSF10 TNFRSF13C TNFSF13 TNFSF13B TNF LTB TNFSF8 TNFRSF13B TNFRSF1A TNFRSF1B TNFSF12 TNFSF15 TNFSF4 TNFRSF17 TNFAIP3 TNFRSF10B TNFRSF10C TNFRSF11A TNFRSF11B TNFRSF12A TNFRSF18 TNFRSF4 TNFRSF8 TNFRSF9 TNFSF11 |
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| 21 | Transporter_Functions na FAS TNFSF11 CD47 CD44 ITGAM ANXA1 APOE ATG10 ATG16L1 ATG7 CD163 CD36 CRP CTSW FCGR2A FYN LAMP1 MERTK MFGE8 NT5E PECAM1 SIGLEC1 |