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b/NEWS.md |
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# MOVICS 0.99.5 |
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* Minimal version of R was declined to 4.0.1. |
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* Two functions were added. |
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* Troubleshooting section was updated. |
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# MOVICS 0.99.6 |
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* Add an error notification prompt: current version of MOVICS can support up to 6 omics datasets and at least 2 datasets must be provided. |
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* Fix bugs when providing more than one binary matrix. |
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* Remove argument of `is.binary` in `getIntNMF()`, please use `type` instead. |
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# MOVICS 0.99.7 |
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* Fix bugs when setting argument of `N.clust` as 2 in `getConsensusClustering()`. |
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# MOVICS 0.99.8 |
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* Fix bugs where argument of `fig.path` is useless in `getSilhouette()`. |
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# MOVICS 0.99.9 |
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* Fix bugs in `compTMB()` if the maximum number of x-axis is less than 3. |
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# MOVICS 0.99.10 |
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* Fix bugs in `compAgree()` if argument of `subt2comp` has more than 2 variables. |
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* Move heatmap legend and annotation legend to the left in `runMarker()` and `runGSVA()`, and return the complexheatmap object for further modification if necessary. |
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# MOVICS 0.99.11 |
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* Fix bugs in `compFGA()` that poses error when only 2 subtypes were identified. |
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# MOVICS 0.99.12 |
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* Correct help document of `drugs` argument in `compDrugsen()`. |
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# MOVICS 0.99.13 |
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* Fix bug in `compClinvar()` if the column `clust` stored in `moic.res$clust` is not located in the second. |
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# MOVICS 0.99.14 |
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* Solve the issue where R package of `SNFtool` was no longer stored by CRAN repository (https://cran.r-project.org/web/packages/SNFtool/index.html). |
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# MOVICS 0.99.15 |
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* Since error occurs when I use the GitHub version of `ComplexHeatmap` to concatenate heatmaps, I replace the requirement for this package by using its Bioconductor version. |
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* R package of `SNFtool` has been removed from the CRAN repository, I replaced this by using GitHub version (https://github.com/maxconway/SNFtool). |
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# MOVICS 0.99.16 |
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* Fix bug in `runMarker()` if argument of `doPlot` was set as `FALSE`. |
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# MOVICS 0.99.17 |
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* Fix bug in installing `MOVICS` regarding the latest version of `ggpmisc`. The dependency `ggpmisc` was replaced by `ggpp` for using `geom_table()`. |
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* Modify `compSurv()` and by default the survival curve will present the entire survival time range instead of 10-year cutoff unless specified by the user. |
Datasets
Models
