--- a +++ b/NEWS.md @@ -0,0 +1,58 @@ +# MOVICS 0.99.5 + +* Minimal version of R was declined to 4.0.1. +* Two functions were added. +* Troubleshooting section was updated. + +# MOVICS 0.99.6 + +* Add an error notification prompt: current version of MOVICS can support up to 6 omics datasets and at least 2 datasets must be provided. +* Fix bugs when providing more than one binary matrix. +* Remove argument of `is.binary` in `getIntNMF()`, please use `type` instead. + +# MOVICS 0.99.7 + +* Fix bugs when setting argument of `N.clust` as 2 in `getConsensusClustering()`. + +# MOVICS 0.99.8 + +* Fix bugs where argument of `fig.path` is useless in `getSilhouette()`. + +# MOVICS 0.99.9 + +* Fix bugs in `compTMB()` if the maximum number of x-axis is less than 3. + +# MOVICS 0.99.10 + +* Fix bugs in `compAgree()` if argument of `subt2comp` has more than 2 variables. +* Move heatmap legend and annotation legend to the left in `runMarker()` and `runGSVA()`, and return the complexheatmap object for further modification if necessary. + +# MOVICS 0.99.11 + +* Fix bugs in `compFGA()` that poses error when only 2 subtypes were identified. + +# MOVICS 0.99.12 + +* Correct help document of `drugs` argument in `compDrugsen()`. + +# MOVICS 0.99.13 + +* Fix bug in `compClinvar()` if the column `clust` stored in `moic.res$clust` is not located in the second. + +# MOVICS 0.99.14 + +* Solve the issue where R package of `SNFtool` was no longer stored by CRAN repository (https://cran.r-project.org/web/packages/SNFtool/index.html). + +# MOVICS 0.99.15 + +* Since error occurs when I use the GitHub version of `ComplexHeatmap` to concatenate heatmaps, I replace the requirement for this package by using its Bioconductor version. +* R package of `SNFtool` has been removed from the CRAN repository, I replaced this by using GitHub version (https://github.com/maxconway/SNFtool). + +# MOVICS 0.99.16 + +* Fix bug in `runMarker()` if argument of `doPlot` was set as `FALSE`. + +# MOVICS 0.99.17 + +* Fix bug in installing `MOVICS` regarding the latest version of `ggpmisc`. The dependency `ggpmisc` was replaced by `ggpp` for using `geom_table()`. +* Modify `compSurv()` and by default the survival curve will present the entire survival time range instead of 10-year cutoff unless specified by the user.