# Generated by roxygen2: do not edit by hand

export(compAgree)

export(compClinvar)

export(compDrugsen)

export(compFGA)

export(compMut)

export(compSurv)

export(compTMB)

export(getCIMLR)

export(getCOCA)

export(getClustNum)

export(getConsensusClustering)

export(getConsensusMOIC)

export(getElites)

export(getIntNMF)

export(getLRAcluster)

export(getMOIC)

export(getMoCluster)

export(getMoHeatmap)

export(getNEMO)

export(getPINSPlus)

export(getSNF)

export(getSilhouette)

export(getStdiz)

export(getiClusterBayes)

export(runDEA)

export(runGSEA)

export(runGSVA)

export(runKappa)

export(runMarker)

export(runNTP)

export(runPAM)

export(twoclassdeseq2)

export(twoclassedger)

export(twoclasslimma)

import(CIMLR)

import(ConsensusClusterPlus)

import(IntNMF)

import(PINSPlus)

import(SNFtool)

import(cluster)

import(coca)

import(ggalluvial)

import(ggplot2)

import(iClusterPlus)

import(mogsa)

import(patchwork)

import(ridge)

import(survival)

import(survminer)

import(sva)

importFrom(CMScaller,ntp)

importFrom(CMScaller,subHeatmap)

importFrom(ClassDiscovery,distanceMatrix)

importFrom(ComplexHeatmap,"%v%")

importFrom(ComplexHeatmap,Heatmap)

importFrom(ComplexHeatmap,HeatmapAnnotation)

importFrom(ComplexHeatmap,anno_mark)

importFrom(ComplexHeatmap,draw)

importFrom(ComplexHeatmap,ht_opt)

importFrom(ComplexHeatmap,oncoPrint)

importFrom(ComplexHeatmap,pheatmap)

importFrom(ComplexHeatmap,rowAnnotation)

importFrom(DESeq2,DESeq)

importFrom(DESeq2,DESeqDataSetFromMatrix)

importFrom(DESeq2,results)

importFrom(GSVA,gsva)

importFrom(PINSPlus,PerturbationClustering)

importFrom(aricode,AMI)

importFrom(aricode,ARI)

importFrom(car,powerTransform)

importFrom(circlize,colorRamp2)

importFrom(clusterProfiler,GSEA)

importFrom(clusterProfiler,read.gmt)

importFrom(clusterRepro,IGP.clusterRepro)

importFrom(cowplot,plot_grid)

importFrom(dplyr,"%>%")

importFrom(dplyr,group_by)

importFrom(dplyr,mutate)

importFrom(dplyr,n)

importFrom(dplyr,summarise)

importFrom(dplyr,summarize)

importFrom(dplyr,tally)

importFrom(edgeR,DGEList)

importFrom(edgeR,calcNormFactors)

importFrom(edgeR,estimateDisp)

importFrom(edgeR,glmFit)

importFrom(edgeR,glmLRT)

importFrom(edgeR,topTags)

importFrom(flexclust,comPart)

importFrom(genefilter,rowttests)

importFrom(ggalluvial,StatStratum)

importFrom(ggplot2,alpha)

importFrom(ggpp,geom_table)

importFrom(ggpubr,stat_compare_means)

importFrom(grDevices,colorRamp)

importFrom(grDevices,colorRampPalette)

importFrom(grDevices,dev.copy2pdf)

importFrom(grDevices,dev.off)

importFrom(grDevices,pdf)

importFrom(grDevices,pdf.options)

importFrom(grid,gpar)

importFrom(grid,grid.rect)

importFrom(impute,impute.knn)

importFrom(jstable,CreateTableOne2)

importFrom(limma,eBayes)

importFrom(limma,lmFit)

importFrom(limma,makeContrasts)

importFrom(limma,topTable)

importFrom(maftools,read.maf)

importFrom(maftools,titv)

importFrom(officer,body_add_par)

importFrom(officer,body_add_table)

importFrom(officer,read_docx)

importFrom(pamr,pamr.train)

importFrom(preprocessCore,normalize.quantiles)

importFrom(reshape2,melt)

importFrom(sva,ComBat)

importFrom(tibble,tibble)

importFrom(vegan,vegdist)