--- a
+++ b/NAMESPACE
@@ -0,0 +1,121 @@
+# Generated by roxygen2: do not edit by hand
+
+export(compAgree)
+export(compClinvar)
+export(compDrugsen)
+export(compFGA)
+export(compMut)
+export(compSurv)
+export(compTMB)
+export(getCIMLR)
+export(getCOCA)
+export(getClustNum)
+export(getConsensusClustering)
+export(getConsensusMOIC)
+export(getElites)
+export(getIntNMF)
+export(getLRAcluster)
+export(getMOIC)
+export(getMoCluster)
+export(getMoHeatmap)
+export(getNEMO)
+export(getPINSPlus)
+export(getSNF)
+export(getSilhouette)
+export(getStdiz)
+export(getiClusterBayes)
+export(runDEA)
+export(runGSEA)
+export(runGSVA)
+export(runKappa)
+export(runMarker)
+export(runNTP)
+export(runPAM)
+export(twoclassdeseq2)
+export(twoclassedger)
+export(twoclasslimma)
+import(CIMLR)
+import(ConsensusClusterPlus)
+import(IntNMF)
+import(PINSPlus)
+import(SNFtool)
+import(cluster)
+import(coca)
+import(ggalluvial)
+import(ggplot2)
+import(iClusterPlus)
+import(mogsa)
+import(patchwork)
+import(ridge)
+import(survival)
+import(survminer)
+import(sva)
+importFrom(CMScaller,ntp)
+importFrom(CMScaller,subHeatmap)
+importFrom(ClassDiscovery,distanceMatrix)
+importFrom(ComplexHeatmap,"%v%")
+importFrom(ComplexHeatmap,Heatmap)
+importFrom(ComplexHeatmap,HeatmapAnnotation)
+importFrom(ComplexHeatmap,anno_mark)
+importFrom(ComplexHeatmap,draw)
+importFrom(ComplexHeatmap,ht_opt)
+importFrom(ComplexHeatmap,oncoPrint)
+importFrom(ComplexHeatmap,pheatmap)
+importFrom(ComplexHeatmap,rowAnnotation)
+importFrom(DESeq2,DESeq)
+importFrom(DESeq2,DESeqDataSetFromMatrix)
+importFrom(DESeq2,results)
+importFrom(GSVA,gsva)
+importFrom(PINSPlus,PerturbationClustering)
+importFrom(aricode,AMI)
+importFrom(aricode,ARI)
+importFrom(car,powerTransform)
+importFrom(circlize,colorRamp2)
+importFrom(clusterProfiler,GSEA)
+importFrom(clusterProfiler,read.gmt)
+importFrom(clusterRepro,IGP.clusterRepro)
+importFrom(cowplot,plot_grid)
+importFrom(dplyr,"%>%")
+importFrom(dplyr,group_by)
+importFrom(dplyr,mutate)
+importFrom(dplyr,n)
+importFrom(dplyr,summarise)
+importFrom(dplyr,summarize)
+importFrom(dplyr,tally)
+importFrom(edgeR,DGEList)
+importFrom(edgeR,calcNormFactors)
+importFrom(edgeR,estimateDisp)
+importFrom(edgeR,glmFit)
+importFrom(edgeR,glmLRT)
+importFrom(edgeR,topTags)
+importFrom(flexclust,comPart)
+importFrom(genefilter,rowttests)
+importFrom(ggalluvial,StatStratum)
+importFrom(ggplot2,alpha)
+importFrom(ggpp,geom_table)
+importFrom(ggpubr,stat_compare_means)
+importFrom(grDevices,colorRamp)
+importFrom(grDevices,colorRampPalette)
+importFrom(grDevices,dev.copy2pdf)
+importFrom(grDevices,dev.off)
+importFrom(grDevices,pdf)
+importFrom(grDevices,pdf.options)
+importFrom(grid,gpar)
+importFrom(grid,grid.rect)
+importFrom(impute,impute.knn)
+importFrom(jstable,CreateTableOne2)
+importFrom(limma,eBayes)
+importFrom(limma,lmFit)
+importFrom(limma,makeContrasts)
+importFrom(limma,topTable)
+importFrom(maftools,read.maf)
+importFrom(maftools,titv)
+importFrom(officer,body_add_par)
+importFrom(officer,body_add_table)
+importFrom(officer,read_docx)
+importFrom(pamr,pamr.train)
+importFrom(preprocessCore,normalize.quantiles)
+importFrom(reshape2,melt)
+importFrom(sva,ComBat)
+importFrom(tibble,tibble)
+importFrom(vegan,vegdist)