Datasets
Models
Diff of
/preprocessing_scr/RNAseq.ipynb
[000000]
..
[d90d15]
Switch to unified view
| a | b/preprocessing_scr/RNAseq.ipynb | ||
|---|---|---|---|
| 1 | { |
||
| 2 | "cells": [ |
||
| 3 | { |
||
| 4 | "cell_type": "code", |
||
| 5 | "execution_count": 1, |
||
| 6 | "metadata": {}, |
||
| 7 | "outputs": [], |
||
| 8 | "source": [ |
||
| 9 | "from __future__ import print_function\n", |
||
| 10 | "import pandas as pd \n", |
||
| 11 | "import matplotlib.pyplot as plt \n", |
||
| 12 | "import numpy as np \n", |
||
| 13 | "from scipy.stats import zscore\n", |
||
| 14 | "import seaborn as sns\n", |
||
| 15 | "import sys,os\n", |
||
| 16 | "from mapper import expand, parse_mapping_table, apply_mappers\n", |
||
| 17 | "%matplotlib inline" |
||
| 18 | ] |
||
| 19 | }, |
||
| 20 | { |
||
| 21 | "cell_type": "code", |
||
| 22 | "execution_count": 2, |
||
| 23 | "metadata": {}, |
||
| 24 | "outputs": [], |
||
| 25 | "source": [ |
||
| 26 | "gene_id = \"ENTREZID\"\n", |
||
| 27 | "raw_data_dir = \"/home/olya/SFU/Hossein/PDX/\" \n", |
||
| 28 | "preprocessed_data_dir = \"/home/olya/SFU/Hossein/v2/preprocessed/exprs/\"\n", |
||
| 29 | "root_dir = \"/home/olya/SFU/Hossein/v2/\"\n", |
||
| 30 | "# wget https://media.nature.com/original/nature-assets/nm/journal/v21/n11/extref/nm.3954-S2.xlsx\n", |
||
| 31 | "# download Entrez ID mapping file" |
||
| 32 | ] |
||
| 33 | }, |
||
| 34 | { |
||
| 35 | "cell_type": "markdown", |
||
| 36 | "metadata": {}, |
||
| 37 | "source": [ |
||
| 38 | "# PDX \n", |
||
| 39 | "\n", |
||
| 40 | "- for 22665 Gene symbols are converted to Gene IDs \n", |
||
| 41 | "- gene expression profiles (FPKM) for 399 samples converted to log2(TPM+1)" |
||
| 42 | ] |
||
| 43 | }, |
||
| 44 | { |
||
| 45 | "cell_type": "code", |
||
| 46 | "execution_count": 3, |
||
| 47 | "metadata": {}, |
||
| 48 | "outputs": [ |
||
| 49 | { |
||
| 50 | "name": "stdout", |
||
| 51 | "output_type": "stream", |
||
| 52 | "text": [ |
||
| 53 | "(22665, 399)\n" |
||
| 54 | ] |
||
| 55 | }, |
||
| 56 | { |
||
| 57 | "data": { |
||
| 58 | "text/html": [ |
||
| 59 | "<div>\n", |
||
| 60 | "<style scoped>\n", |
||
| 61 | " .dataframe tbody tr th:only-of-type {\n", |
||
| 62 | " vertical-align: middle;\n", |
||
| 63 | " }\n", |
||
| 64 | "\n", |
||
| 65 | " .dataframe tbody tr th {\n", |
||
| 66 | " vertical-align: top;\n", |
||
| 67 | " }\n", |
||
| 68 | "\n", |
||
| 69 | " .dataframe thead th {\n", |
||
| 70 | " text-align: right;\n", |
||
| 71 | " }\n", |
||
| 72 | "</style>\n", |
||
| 73 | "<table border=\"1\" class=\"dataframe\">\n", |
||
| 74 | " <thead>\n", |
||
| 75 | " <tr style=\"text-align: right;\">\n", |
||
| 76 | " <th></th>\n", |
||
| 77 | " <th>X-1004</th>\n", |
||
| 78 | " <th>X-1008</th>\n", |
||
| 79 | " <th>X-1027</th>\n", |
||
| 80 | " <th>X-1095</th>\n", |
||
| 81 | " <th>X-1119</th>\n", |
||
| 82 | " <th>X-1156</th>\n", |
||
| 83 | " <th>X-1167</th>\n", |
||
| 84 | " <th>X-1169</th>\n", |
||
| 85 | " <th>X-1172</th>\n", |
||
| 86 | " <th>X-1173</th>\n", |
||
| 87 | " <th>...</th>\n", |
||
| 88 | " <th>X-5713</th>\n", |
||
| 89 | " <th>X-5717</th>\n", |
||
| 90 | " <th>X-5727</th>\n", |
||
| 91 | " <th>X-5739</th>\n", |
||
| 92 | " <th>X-5808</th>\n", |
||
| 93 | " <th>X-5959</th>\n", |
||
| 94 | " <th>X-5974</th>\n", |
||
| 95 | " <th>X-5975</th>\n", |
||
| 96 | " <th>X-6030</th>\n", |
||
| 97 | " <th>X-6047</th>\n", |
||
| 98 | " </tr>\n", |
||
| 99 | " <tr>\n", |
||
| 100 | " <th>Sample</th>\n", |
||
| 101 | " <th></th>\n", |
||
| 102 | " <th></th>\n", |
||
| 103 | " <th></th>\n", |
||
| 104 | " <th></th>\n", |
||
| 105 | " <th></th>\n", |
||
| 106 | " <th></th>\n", |
||
| 107 | " <th></th>\n", |
||
| 108 | " <th></th>\n", |
||
| 109 | " <th></th>\n", |
||
| 110 | " <th></th>\n", |
||
| 111 | " <th></th>\n", |
||
| 112 | " <th></th>\n", |
||
| 113 | " <th></th>\n", |
||
| 114 | " <th></th>\n", |
||
| 115 | " <th></th>\n", |
||
| 116 | " <th></th>\n", |
||
| 117 | " <th></th>\n", |
||
| 118 | " <th></th>\n", |
||
| 119 | " <th></th>\n", |
||
| 120 | " <th></th>\n", |
||
| 121 | " <th></th>\n", |
||
| 122 | " </tr>\n", |
||
| 123 | " </thead>\n", |
||
| 124 | " <tbody>\n", |
||
| 125 | " <tr>\n", |
||
| 126 | " <th>A1BG</th>\n", |
||
| 127 | " <td>2.75</td>\n", |
||
| 128 | " <td>8.97</td>\n", |
||
| 129 | " <td>0.14</td>\n", |
||
| 130 | " <td>0.13</td>\n", |
||
| 131 | " <td>0.08</td>\n", |
||
| 132 | " <td>17.52</td>\n", |
||
| 133 | " <td>0.18</td>\n", |
||
| 134 | " <td>0.41</td>\n", |
||
| 135 | " <td>0.08</td>\n", |
||
| 136 | " <td>0.00</td>\n", |
||
| 137 | " <td>...</td>\n", |
||
| 138 | " <td>21.24</td>\n", |
||
| 139 | " <td>0.46</td>\n", |
||
| 140 | " <td>18.70</td>\n", |
||
| 141 | " <td>0.00</td>\n", |
||
| 142 | " <td>8.30</td>\n", |
||
| 143 | " <td>14.41</td>\n", |
||
| 144 | " <td>5.09</td>\n", |
||
| 145 | " <td>6.35</td>\n", |
||
| 146 | " <td>0.09</td>\n", |
||
| 147 | " <td>3.22</td>\n", |
||
| 148 | " </tr>\n", |
||
| 149 | " <tr>\n", |
||
| 150 | " <th>A1BG-AS1</th>\n", |
||
| 151 | " <td>2.48</td>\n", |
||
| 152 | " <td>3.25</td>\n", |
||
| 153 | " <td>0.00</td>\n", |
||
| 154 | " <td>0.00</td>\n", |
||
| 155 | " <td>0.00</td>\n", |
||
| 156 | " <td>6.52</td>\n", |
||
| 157 | " <td>0.00</td>\n", |
||
| 158 | " <td>0.00</td>\n", |
||
| 159 | " <td>0.00</td>\n", |
||
| 160 | " <td>0.00</td>\n", |
||
| 161 | " <td>...</td>\n", |
||
| 162 | " <td>15.21</td>\n", |
||
| 163 | " <td>0.09</td>\n", |
||
| 164 | " <td>3.42</td>\n", |
||
| 165 | " <td>0.00</td>\n", |
||
| 166 | " <td>8.30</td>\n", |
||
| 167 | " <td>8.36</td>\n", |
||
| 168 | " <td>3.71</td>\n", |
||
| 169 | " <td>4.52</td>\n", |
||
| 170 | " <td>0.00</td>\n", |
||
| 171 | " <td>3.24</td>\n", |
||
| 172 | " </tr>\n", |
||
| 173 | " <tr>\n", |
||
| 174 | " <th>A1CF</th>\n", |
||
| 175 | " <td>0.02</td>\n", |
||
| 176 | " <td>0.03</td>\n", |
||
| 177 | " <td>1.30</td>\n", |
||
| 178 | " <td>2.83</td>\n", |
||
| 179 | " <td>2.87</td>\n", |
||
| 180 | " <td>0.72</td>\n", |
||
| 181 | " <td>3.41</td>\n", |
||
| 182 | " <td>0.01</td>\n", |
||
| 183 | " <td>1.84</td>\n", |
||
| 184 | " <td>2.96</td>\n", |
||
| 185 | " <td>...</td>\n", |
||
| 186 | " <td>0.01</td>\n", |
||
| 187 | " <td>0.45</td>\n", |
||
| 188 | " <td>0.00</td>\n", |
||
| 189 | " <td>0.01</td>\n", |
||
| 190 | " <td>0.00</td>\n", |
||
| 191 | " <td>0.00</td>\n", |
||
| 192 | " <td>0.02</td>\n", |
||
| 193 | " <td>0.03</td>\n", |
||
| 194 | " <td>4.63</td>\n", |
||
| 195 | " <td>0.02</td>\n", |
||
| 196 | " </tr>\n", |
||
| 197 | " <tr>\n", |
||
| 198 | " <th>A2LD1</th>\n", |
||
| 199 | " <td>4.87</td>\n", |
||
| 200 | " <td>0.81</td>\n", |
||
| 201 | " <td>6.45</td>\n", |
||
| 202 | " <td>4.94</td>\n", |
||
| 203 | " <td>11.07</td>\n", |
||
| 204 | " <td>0.87</td>\n", |
||
| 205 | " <td>3.28</td>\n", |
||
| 206 | " <td>0.32</td>\n", |
||
| 207 | " <td>0.61</td>\n", |
||
| 208 | " <td>7.10</td>\n", |
||
| 209 | " <td>...</td>\n", |
||
| 210 | " <td>1.33</td>\n", |
||
| 211 | " <td>2.51</td>\n", |
||
| 212 | " <td>2.67</td>\n", |
||
| 213 | " <td>3.13</td>\n", |
||
| 214 | " <td>0.44</td>\n", |
||
| 215 | " <td>2.96</td>\n", |
||
| 216 | " <td>0.00</td>\n", |
||
| 217 | " <td>1.99</td>\n", |
||
| 218 | " <td>2.57</td>\n", |
||
| 219 | " <td>1.50</td>\n", |
||
| 220 | " </tr>\n", |
||
| 221 | " <tr>\n", |
||
| 222 | " <th>A2M</th>\n", |
||
| 223 | " <td>0.01</td>\n", |
||
| 224 | " <td>71.17</td>\n", |
||
| 225 | " <td>0.00</td>\n", |
||
| 226 | " <td>3.69</td>\n", |
||
| 227 | " <td>0.00</td>\n", |
||
| 228 | " <td>58.16</td>\n", |
||
| 229 | " <td>0.00</td>\n", |
||
| 230 | " <td>0.02</td>\n", |
||
| 231 | " <td>94.12</td>\n", |
||
| 232 | " <td>0.02</td>\n", |
||
| 233 | " <td>...</td>\n", |
||
| 234 | " <td>463.32</td>\n", |
||
| 235 | " <td>0.04</td>\n", |
||
| 236 | " <td>33.35</td>\n", |
||
| 237 | " <td>0.00</td>\n", |
||
| 238 | " <td>254.97</td>\n", |
||
| 239 | " <td>41.52</td>\n", |
||
| 240 | " <td>2.32</td>\n", |
||
| 241 | " <td>0.00</td>\n", |
||
| 242 | " <td>0.00</td>\n", |
||
| 243 | " <td>0.16</td>\n", |
||
| 244 | " </tr>\n", |
||
| 245 | " </tbody>\n", |
||
| 246 | "</table>\n", |
||
| 247 | "<p>5 rows × 399 columns</p>\n", |
||
| 248 | "</div>" |
||
| 249 | ], |
||
| 250 | "text/plain": [ |
||
| 251 | " X-1004 X-1008 X-1027 X-1095 X-1119 X-1156 X-1167 X-1169 \\\n", |
||
| 252 | "Sample \n", |
||
| 253 | "A1BG 2.75 8.97 0.14 0.13 0.08 17.52 0.18 0.41 \n", |
||
| 254 | "A1BG-AS1 2.48 3.25 0.00 0.00 0.00 6.52 0.00 0.00 \n", |
||
| 255 | "A1CF 0.02 0.03 1.30 2.83 2.87 0.72 3.41 0.01 \n", |
||
| 256 | "A2LD1 4.87 0.81 6.45 4.94 11.07 0.87 3.28 0.32 \n", |
||
| 257 | "A2M 0.01 71.17 0.00 3.69 0.00 58.16 0.00 0.02 \n", |
||
| 258 | "\n", |
||
| 259 | " X-1172 X-1173 ... X-5713 X-5717 X-5727 X-5739 X-5808 \\\n", |
||
| 260 | "Sample ... \n", |
||
| 261 | "A1BG 0.08 0.00 ... 21.24 0.46 18.70 0.00 8.30 \n", |
||
| 262 | "A1BG-AS1 0.00 0.00 ... 15.21 0.09 3.42 0.00 8.30 \n", |
||
| 263 | "A1CF 1.84 2.96 ... 0.01 0.45 0.00 0.01 0.00 \n", |
||
| 264 | "A2LD1 0.61 7.10 ... 1.33 2.51 2.67 3.13 0.44 \n", |
||
| 265 | "A2M 94.12 0.02 ... 463.32 0.04 33.35 0.00 254.97 \n", |
||
| 266 | "\n", |
||
| 267 | " X-5959 X-5974 X-5975 X-6030 X-6047 \n", |
||
| 268 | "Sample \n", |
||
| 269 | "A1BG 14.41 5.09 6.35 0.09 3.22 \n", |
||
| 270 | "A1BG-AS1 8.36 3.71 4.52 0.00 3.24 \n", |
||
| 271 | "A1CF 0.00 0.02 0.03 4.63 0.02 \n", |
||
| 272 | "A2LD1 2.96 0.00 1.99 2.57 1.50 \n", |
||
| 273 | "A2M 41.52 2.32 0.00 0.00 0.16 \n", |
||
| 274 | "\n", |
||
| 275 | "[5 rows x 399 columns]" |
||
| 276 | ] |
||
| 277 | }, |
||
| 278 | "execution_count": 3, |
||
| 279 | "metadata": {}, |
||
| 280 | "output_type": "execute_result" |
||
| 281 | } |
||
| 282 | ], |
||
| 283 | "source": [ |
||
| 284 | "exprs = pd.read_excel(raw_data_dir+\"nm.3954-S2.xlsx\",\"RNAseq_fpkm\")\n", |
||
| 285 | "exprs.set_index(\"Sample\",inplace=True,drop=True)\n", |
||
| 286 | "print(exprs.shape)\n", |
||
| 287 | "exprs.head() " |
||
| 288 | ] |
||
| 289 | }, |
||
| 290 | { |
||
| 291 | "cell_type": "markdown", |
||
| 292 | "metadata": {}, |
||
| 293 | "source": [ |
||
| 294 | "# Mapping of gene symbols to EntrezID using current gene_info file prowided by NCBI:\n", |
||
| 295 | "\n", |
||
| 296 | "\n", |
||
| 297 | " * Download the unzip the file \n", |
||
| 298 | "\\# wget ftp://ftp.ncbi.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz\n", |
||
| 299 | "\\# gunzip Homo_sapiens.gene_info.gz;\n", |
||
| 300 | " * Specify *hgnc_file* variable in this notebook\n", |
||
| 301 | " * Mapping strategy\n", |
||
| 302 | " \n", |
||
| 303 | "1). Unknown genes and genes belonging to organisms other than H.sapiens were excluded.\n", |
||
| 304 | "\n", |
||
| 305 | "2). First each query symbol was tried to match with any of current \"Symbol\" directly. If the query symbol mapped to one of current symbol but has no Gene ID, the query symbol was marked as not mapped. \n", |
||
| 306 | "\n", |
||
| 307 | "3). If the query symbol matches none of current symbols, we tried to match it with one of \"Synonyms\". Genes matched no synonym as well as matched ambiguous synonyms correponding more than one Gene ID were condiered not mapped. \n", |
||
| 308 | "\n", |
||
| 309 | "4). At this point, many of not recognized symbols had LOCXXXXXXXXX format. \n", |
||
| 310 | "According to the documntation provided by NCBI: \"Symbols beginning with LOC. When a published symbol is not available, and orthologs have not yet been determined, Gene will provide a symbol that is constructed as 'LOC' + the GeneID. This is not retained when a replacement symbol has been identified, although queries by the LOC term are still supported. In other words, a record with the symbol LOC12345 is equivalent to GeneID = 12345. So if the symbol changes, the record can still be retrieved on the web using LOC12345 as a query, or from any file using GeneID = 12345\" e.g. :\n", |
||
| 311 | "\n", |
||
| 312 | " - LOC100093631 -> 100093631 \n", |
||
| 313 | " - LOC100129726 -> 100129726\n", |
||
| 314 | " - etc. \n", |
||
| 315 | "\n", |
||
| 316 | "Therefore all genes started with LOC were converted to Gene IDs removing \"LOC\" from query term. If resulting Gene ID matched none of current Gene IDs the symbol was considered not mapped. \n", |
||
| 317 | "\n", |
||
| 318 | "4). Several pairs of query gene symbols matched current symbol and synonym of the same Entrez gene ID, e.g. AGAP8 and AGAP4, ANXA8L1 and ANXA8L2, etc.\n", |
||
| 319 | "Expressions of these genes were summarized because such genes were merged to a single gene in newer assembly versions." |
||
| 320 | ] |
||
| 321 | }, |
||
| 322 | { |
||
| 323 | "cell_type": "code", |
||
| 324 | "execution_count": 5, |
||
| 325 | "metadata": {}, |
||
| 326 | "outputs": [ |
||
| 327 | { |
||
| 328 | "name": "stderr", |
||
| 329 | "output_type": "stream", |
||
| 330 | "text": [ |
||
| 331 | "2547 rows with both Previous Symbols and Entrez Gene ID empty\n", |
||
| 332 | "Ok: no duplicated pairs detected\n", |
||
| 333 | "27336 rows with empty Previous Symbols were excluded\n", |
||
| 334 | "173 Previous Symbols ids mapped to no Entrez Gene ID\n", |
||
| 335 | "83 Previous Symbols mapped to multiple Entrez Gene ID\n", |
||
| 336 | "4697 different Previous Symbols mapped to the same Entrez Gene ID\n", |
||
| 337 | "9336 Previous Symbols can be mapped directly to Entrez Gene ID\n" |
||
| 338 | ] |
||
| 339 | } |
||
| 340 | ], |
||
| 341 | "source": [ |
||
| 342 | "hgnc_file = root_dir+\"HGNC_5.10.2018.txt\"\n", |
||
| 343 | "\n", |
||
| 344 | "hgnc = pd.read_csv(hgnc_file, sep =\"\\t\",index_col=0)#\n", |
||
| 345 | "#print(hgnc.shape, len(set(hgnc.index.values)))\n", |
||
| 346 | "approved = hgnc.loc[hgnc[\"Status\"] == \"Approved\",:]\n", |
||
| 347 | "hgnc_prev = expand(approved[[\"Previous Symbols\",\"Entrez Gene ID\"]],column=\"Previous Symbols\",sep=\", \") \n", |
||
| 348 | "hgnc_prev = parse_mapping_table(hgnc_prev, \"Previous Symbols\",\"Entrez Gene ID\")" |
||
| 349 | ] |
||
| 350 | }, |
||
| 351 | { |
||
| 352 | "cell_type": "code", |
||
| 353 | "execution_count": 6, |
||
| 354 | "metadata": {}, |
||
| 355 | "outputs": [ |
||
| 356 | { |
||
| 357 | "name": "stderr", |
||
| 358 | "output_type": "stream", |
||
| 359 | "text": [ |
||
| 360 | "2224 rows with both Synonyms and Entrez Gene ID empty\n", |
||
| 361 | "Ok: no duplicated pairs detected\n", |
||
| 362 | "18283 rows with empty Synonyms were excluded\n", |
||
| 363 | "662 Synonyms ids mapped to no Entrez Gene ID\n", |
||
| 364 | "962 Synonyms mapped to multiple Entrez Gene ID\n", |
||
| 365 | "27509 different Synonyms mapped to the same Entrez Gene ID\n", |
||
| 366 | "10612 Synonyms can be mapped directly to Entrez Gene ID\n" |
||
| 367 | ] |
||
| 368 | } |
||
| 369 | ], |
||
| 370 | "source": [ |
||
| 371 | "hgnc_syn = expand(approved[[\"Synonyms\",\"Entrez Gene ID\"]],column=\"Synonyms\",sep=\", \") \n", |
||
| 372 | "hgnc_syn = parse_mapping_table(hgnc_syn, \"Synonyms\",\"Entrez Gene ID\")" |
||
| 373 | ] |
||
| 374 | }, |
||
| 375 | { |
||
| 376 | "cell_type": "code", |
||
| 377 | "execution_count": 7, |
||
| 378 | "metadata": {}, |
||
| 379 | "outputs": [ |
||
| 380 | { |
||
| 381 | "name": "stderr", |
||
| 382 | "output_type": "stream", |
||
| 383 | "text": [ |
||
| 384 | "Ok: no empty rows detected\n", |
||
| 385 | "Ok: no duplicated pairs detected\n", |
||
| 386 | "Ok: All Symbol rows are not empty.\n", |
||
| 387 | "Ok: All Symbol are mapped to GeneID\n", |
||
| 388 | "16 Symbol mapped to multiple GeneID\n", |
||
| 389 | "Ok: All GeneID are unique\n", |
||
| 390 | "59266 Symbol can be mapped directly to GeneID\n" |
||
| 391 | ] |
||
| 392 | } |
||
| 393 | ], |
||
| 394 | "source": [ |
||
| 395 | "NCBI = pd.read_csv(root_dir+\"Homo_sapiens.gene_info\",sep = \"\\t\")\n", |
||
| 396 | "NCBI = NCBI[[\"#tax_id\",\"GeneID\",\"Symbol\",\"Synonyms\",\"type_of_gene\"]]\n", |
||
| 397 | "NCBI = NCBI.loc[NCBI[\"#tax_id\"] == 9606]\n", |
||
| 398 | "NCBI = NCBI.loc[NCBI[\"type_of_gene\"] != \"unknown\"]\n", |
||
| 399 | "ncbi_symbols = parse_mapping_table(NCBI, \"Symbol\",\"GeneID\")" |
||
| 400 | ] |
||
| 401 | }, |
||
| 402 | { |
||
| 403 | "cell_type": "code", |
||
| 404 | "execution_count": 8, |
||
| 405 | "metadata": {}, |
||
| 406 | "outputs": [ |
||
| 407 | { |
||
| 408 | "name": "stderr", |
||
| 409 | "output_type": "stream", |
||
| 410 | "text": [ |
||
| 411 | "Ok: no empty rows detected\n", |
||
| 412 | "Ok: no duplicated pairs detected\n", |
||
| 413 | "Ok: All Synonyms rows are not empty.\n", |
||
| 414 | "Ok: All Synonyms are mapped to GeneID\n", |
||
| 415 | "3145 Synonyms mapped to multiple GeneID\n", |
||
| 416 | "49179 different Synonyms mapped to the same GeneID\n", |
||
| 417 | "10839 Synonyms can be mapped directly to GeneID\n" |
||
| 418 | ] |
||
| 419 | } |
||
| 420 | ], |
||
| 421 | "source": [ |
||
| 422 | "ncbi_synonyms = expand(NCBI[[\"Synonyms\",\"GeneID\"]],column=\"Synonyms\",sep=\"|\") \n", |
||
| 423 | "ncbi_synonyms = parse_mapping_table(ncbi_synonyms, \"Synonyms\",\"GeneID\")" |
||
| 424 | ] |
||
| 425 | }, |
||
| 426 | { |
||
| 427 | "cell_type": "code", |
||
| 428 | "execution_count": 9, |
||
| 429 | "metadata": {}, |
||
| 430 | "outputs": [ |
||
| 431 | { |
||
| 432 | "name": "stdout", |
||
| 433 | "output_type": "stream", |
||
| 434 | "text": [ |
||
| 435 | "Mapped: 22467 \n", |
||
| 436 | "\tdirectly via main_mapper 20272 \n", |
||
| 437 | "\tvia alternative mapper 471 \n", |
||
| 438 | "\tvia one of multiple synonyms in alternative mapper 1026 \n", |
||
| 439 | "\tLOC 698 \n", |
||
| 440 | "Unmapped: 198 \n", |
||
| 441 | "\trecognized symbols without Entrez ID 0 \n", |
||
| 442 | "\tmultiple query_ids map to the same target_id 0 \n", |
||
| 443 | "\tquery_ids map to multiple target_ids in the main mapper 0 \n", |
||
| 444 | "\tquery_ids map to multiple target_ids in the alternative mapper 54 \n", |
||
| 445 | "\tLOC not found in Entrez 26 \n", |
||
| 446 | "\tNot found at all: 118\n", |
||
| 447 | "Warning: query IDs mapping to duplicated target IDs in mapping table: 47\n", |
||
| 448 | "Warning: query IDs not mapped to any target IDs excluded: 198\n" |
||
| 449 | ] |
||
| 450 | }, |
||
| 451 | { |
||
| 452 | "ename": "AttributeError", |
||
| 453 | "evalue": "'tuple' object has no attribute 'head'", |
||
| 454 | "output_type": "error", |
||
| 455 | "traceback": [ |
||
| 456 | "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", |
||
| 457 | "\u001b[0;31mAttributeError\u001b[0m Traceback (most recent call last)", |
||
| 458 | "\u001b[0;32m<ipython-input-9-c037e6e14d06>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m()\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[0mexprs\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mapply_mappers\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mexprs\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mncbi_symbols\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mncbi_synonyms\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mverbose\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mTrue\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0mhandle_duplicates\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;34m\"sum\"\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m----> 2\u001b[0;31m \u001b[0mexprs\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mhead\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;36m5\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m", |
||
| 459 | "\u001b[0;31mAttributeError\u001b[0m: 'tuple' object has no attribute 'head'" |
||
| 460 | ] |
||
| 461 | } |
||
| 462 | ], |
||
| 463 | "source": [ |
||
| 464 | "exprs = apply_mappers(exprs, ncbi_symbols, ncbi_synonyms, verbose = True,handle_duplicates = \"sum\")\n", |
||
| 465 | "exprs.head(5)" |
||
| 466 | ] |
||
| 467 | }, |
||
| 468 | { |
||
| 469 | "cell_type": "markdown", |
||
| 470 | "metadata": {}, |
||
| 471 | "source": [ |
||
| 472 | "### FPKM to TPM conversion\n", |
||
| 473 | "Let $X_i$ is a number of fragments mapped to a transcript, $N$ is a total number of fragments sequensed (and assigned to any transcript) and $\\widetilde{l_i}$ is an effective length of a transcript (i.e. how many fragments with average length $\\mu_{frag}$ can generate a transcript of length $l_i$: $\\widetilde{l_i} = l_i - \\mu_{frag}+1$)\n", |
||
| 474 | "\n", |
||
| 475 | "*FPKM* - fragments per kilobase of exon (i.e. effective length) per million reads mapped\n", |
||
| 476 | "\n", |
||
| 477 | "$FPKM_i = \\frac{X_i}{\\frac{$\\widetilde{l_i}}{10^3}*\\frac{N}{10^6}} = \\frac{X_i}{l_iN}*10^9 $\n", |
||
| 478 | "\n", |
||
| 479 | "*TPM* - transcripts per million of transcripts.\n", |
||
| 480 | "\n", |
||
| 481 | "In turn, $\\frac{X_i}{\\widetilde{l_i}}$ is estimated number of transcripts \n", |
||
| 482 | "\n", |
||
| 483 | "$TPM_i = \\frac{\\frac{X_i}{\\widetilde{l_i}}}{\\sum_j{\\frac{X_j}{\\widetilde{l_j}}}}*10^6 $\n", |
||
| 484 | "\n", |
||
| 485 | "\n", |
||
| 486 | "### how to convert FPKM to TPM\n", |
||
| 487 | "Divide both numerator and denominator by $N$ and mutiply by $10^9$:\n", |
||
| 488 | "\n", |
||
| 489 | "$TPM_i = \\frac{\\frac{X_i}{N\\widetilde{l_i}}*10^9}{\\sum_j{\\frac{X_j}{N\\widetilde{l_j}}*10^9}}*10^6 = \\frac{FPKM_i}{\\sum_j{FPKM_j}} * 10^6$\n", |
||
| 490 | "\n", |
||
| 491 | "Sources:\n", |
||
| 492 | " - What the FPKM? https://haroldpimentel.wordpress.com/2014/05/08/what-the-fpkm-a-review-rna-seq-expression-units/\n", |
||
| 493 | " - https://www.biostars.org/p/160989/\n", |
||
| 494 | " - Lior Pachter https://arxiv.org/pdf/1104.3889.pdf\n" |
||
| 495 | ] |
||
| 496 | }, |
||
| 497 | { |
||
| 498 | "cell_type": "code", |
||
| 499 | "execution_count": null, |
||
| 500 | "metadata": { |
||
| 501 | "scrolled": true |
||
| 502 | }, |
||
| 503 | "outputs": [], |
||
| 504 | "source": [ |
||
| 505 | "## FPKM convert to log2(TPM+1)\n", |
||
| 506 | "sum_fpkm = exprs.apply(sum,axis=0)\n", |
||
| 507 | "sum_fpkm.head()" |
||
| 508 | ] |
||
| 509 | }, |
||
| 510 | { |
||
| 511 | "cell_type": "code", |
||
| 512 | "execution_count": null, |
||
| 513 | "metadata": {}, |
||
| 514 | "outputs": [], |
||
| 515 | "source": [ |
||
| 516 | "tpm = exprs / sum_fpkm *1000000 +1\n", |
||
| 517 | "tpm.head()" |
||
| 518 | ] |
||
| 519 | }, |
||
| 520 | { |
||
| 521 | "cell_type": "code", |
||
| 522 | "execution_count": null, |
||
| 523 | "metadata": {}, |
||
| 524 | "outputs": [], |
||
| 525 | "source": [ |
||
| 526 | "\n", |
||
| 527 | "tpm = tpm.applymap(np.log2)\n", |
||
| 528 | "#tpm.to_csv(preprocessed_data_dir + \"/PDX.FPKM2TPMplus1log2.Expr.tsv\",sep=\"\\t\")\n", |
||
| 529 | "print(tpm.shape)\n", |
||
| 530 | "tpm.head()\n" |
||
| 531 | ] |
||
| 532 | }, |
||
| 533 | { |
||
| 534 | "cell_type": "code", |
||
| 535 | "execution_count": null, |
||
| 536 | "metadata": {}, |
||
| 537 | "outputs": [], |
||
| 538 | "source": [] |
||
| 539 | }, |
||
| 540 | { |
||
| 541 | "cell_type": "markdown", |
||
| 542 | "metadata": {}, |
||
| 543 | "source": [ |
||
| 544 | "# TCGA \n", |
||
| 545 | "\n", |
||
| 546 | "* from http://gdac.broadinstitute.org/runs/stddata__2016_01_18/data/ download RSEM files, \"scaled estimate\" per gene. \n", |
||
| 547 | "\n", |
||
| 548 | "* RSEM Scaled estimate is an aboundance of a transcript divided by sum of aboundance over all the transcripts. Therefore $TPM_i=ScaledEstimate_i*10^6$\n", |
||
| 549 | "\n", |
||
| 550 | "* Resulted TPM were log2-transformed" |
||
| 551 | ] |
||
| 552 | }, |
||
| 553 | { |
||
| 554 | "cell_type": "code", |
||
| 555 | "execution_count": 3, |
||
| 556 | "metadata": {}, |
||
| 557 | "outputs": [], |
||
| 558 | "source": [ |
||
| 559 | "# replace with downloading \n", |
||
| 560 | "tcga_tmp_dir = \"/home/olya/SFU/Hossein/TCGA/expression__2016_01_28/\"" |
||
| 561 | ] |
||
| 562 | }, |
||
| 563 | { |
||
| 564 | "cell_type": "code", |
||
| 565 | "execution_count": 10, |
||
| 566 | "metadata": { |
||
| 567 | "scrolled": true |
||
| 568 | }, |
||
| 569 | "outputs": [ |
||
| 570 | { |
||
| 571 | "name": "stdout", |
||
| 572 | "output_type": "stream", |
||
| 573 | "text": [ |
||
| 574 | "gdac.broadinstitute.org_BRCA.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 BRCA\n" |
||
| 575 | ] |
||
| 576 | }, |
||
| 577 | { |
||
| 578 | "name": "stderr", |
||
| 579 | "output_type": "stream", |
||
| 580 | "text": [ |
||
| 581 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926,928,929,931,932,934,935,937,938,940,941,943,944,946,947,949,950,952,953,955,956,958,959,961,962,964,965,967,968,970,971,973,974,976,977,979,980,982,983,985,986,988,989,991,992,994,995,997,998,1000,1001,1003,1004,1006,1007,1009,1010,1012,1013,1015,1016,1018,1019,1021,1022,1024,1025,1027,1028,1030,1031,1033,1034,1036,1037,1039,1040,1042,1043,1045,1046,1048,1049,1051,1052,1054,1055,1057,1058,1060,1061,1063,1064,1066,1067,1069,1070,1072,1073,1075,1076,1078,1079,1081,1082,1084,1085,1087,1088,1090,1091,1093,1094,1096,1097,1099,1100,1102,1103,1105,1106,1108,1109,1111,1112,1114,1115,1117,1118,1120,1121,1123,1124,1126,1127,1129,1130,1132,1133,1135,1136,1138,1139,1141,1142,1144,1145,1147,1148,1150,1151,1153,1154,1156,1157,1159,1160,1162,1163,1165,1166,1168,1169,1171,1172,1174,1175,1177,1178,1180,1181,1183,1184,1186,1187,1189,1190,1192,1193,1195,1196,1198,1199,1201,1202,1204,1205,1207,1208,1210,1211,1213,1214,1216,1217,1219,1220,1222,1223,1225,1226,1228,1229,1231,1232,1234,1235,1237,1238,1240,1241,1243,1244,1246,1247,1249,1250,1252,1253,1255,1256,1258,1259,1261,1262,1264,1265,1267,1268,1270,1271,1273,1274,1276,1277,1279,1280,1282,1283,1285,1286,1288,1289,1291,1292,1294,1295,1297,1298,1300,1301,1303,1304,1306,1307,1309,1310,1312,1313,1315,1316,1318,1319,1321,1322,1324,1325,1327,1328,1330,1331,1333,1334,1336,1337,1339,1340,1342,1343,1345,1346,1348,1349,1351,1352,1354,1355,1357,1358,1360,1361,1363,1364,1366,1367,1369,1370,1372,1373,1375,1376,1378,1379,1381,1382,1384,1385,1387,1388,1390,1391,1393,1394,1396,1397,1399,1400,1402,1403,1405,1406,1408,1409,1411,1412,1414,1415,1417,1418,1420,1421,1423,1424,1426,1427,1429,1430,1432,1433,1435,1436,1438,1439,1441,1442,1444,1445,1447,1448,1450,1451,1453,1454,1456,1457,1459,1460,1462,1463,1465,1466,1468,1469,1471,1472,1474,1475,1477,1478,1480,1481,1483,1484,1486,1487,1489,1490,1492,1493,1495,1496,1498,1499,1501,1502,1504,1505,1507,1508,1510,1511,1513,1514,1516,1517,1519,1520,1522,1523,1525,1526,1528,1529,1531,1532,1534,1535,1537,1538,1540,1541,1543,1544,1546,1547,1549,1550,1552,1553,1555,1556,1558,1559,1561,1562,1564,1565,1567,1568,1570,1571,1573,1574,1576,1577,1579,1580,1582,1583,1585,1586,1588,1589,1591,1592,1594,1595,1597,1598,1600,1601,1603,1604,1606,1607,1609,1610,1612,1613,1615,1616,1618,1619,1621,1622,1624,1625,1627,1628,1630,1631,1633,1634,1636,1637,1639,1640,1642,1643,1645,1646,1648,1649,1651,1652,1654,1655,1657,1658,1660,1661,1663,1664,1666,1667,1669,1670,1672,1673,1675,1676,1678,1679,1681,1682,1684,1685,1687,1688,1690,1691,1693,1694,1696,1697,1699,1700,1702,1703,1705,1706,1708,1709,1711,1712,1714,1715,1717,1718,1720,1721,1723,1724,1726,1727,1729,1730,1732,1733,1735,1736,1738,1739,1741,1742,1744,1745,1747,1748,1750,1751,1753,1754,1756,1757,1759,1760,1762,1763,1765,1766,1768,1769,1771,1772,1774,1775,1777,1778,1780,1781,1783,1784,1786,1787,1789,1790,1792,1793,1795,1796,1798,1799,1801,1802,1804,1805,1807,1808,1810,1811,1813,1814,1816,1817,1819,1820,1822,1823,1825,1826,1828,1829,1831,1832,1834,1835,1837,1838,1840,1841,1843,1844,1846,1847,1849,1850,1852,1853,1855,1856,1858,1859,1861,1862,1864,1865,1867,1868,1870,1871,1873,1874,1876,1877,1879,1880,1882,1883,1885,1886,1888,1889,1891,1892,1894,1895,1897,1898,1900,1901,1903,1904,1906,1907,1909,1910,1912,1913,1915,1916,1918,1919,1921,1922,1924,1925,1927,1928,1930,1931,1933,1934,1936,1937,1939,1940,1942,1943,1945,1946,1948,1949,1951,1952,1954,1955,1957,1958,1960,1961,1963,1964,1966,1967,1969,1970,1972,1973,1975,1976,1978,1979,1981,1982,1984,1985,1987,1988,1990,1991,1993,1994,1996,1997,1999,2000,2002,2003,2005,2006,2008,2009,2011,2012,2014,2015,2017,2018,2020,2021,2023,2024,2026,2027,2029,2030,2032,2033,2035,2036,2038,2039,2041,2042,2044,2045,2047,2048,2050,2051,2053,2054,2056,2057,2059,2060,2062,2063,2065,2066,2068,2069,2071,2072,2074,2075,2077,2078,2080,2081,2083,2084,2086,2087,2089,2090,2092,2093,2095,2096,2098,2099,2101,2102,2104,2105,2107,2108,2110,2111,2113,2114,2116,2117,2119,2120,2122,2123,2125,2126,2128,2129,2131,2132,2134,2135,2137,2138,2140,2141,2143,2144,2146,2147,2149,2150,2152,2153,2155,2156,2158,2159,2161,2162,2164,2165,2167,2168,2170,2171,2173,2174,2176,2177,2179,2180,2182,2183,2185,2186,2188,2189,2191,2192,2194,2195,2197,2198,2200,2201,2203,2204,2206,2207,2209,2210,2212,2213,2215,2216,2218,2219,2221,2222,2224,2225,2227,2228,2230,2231,2233,2234,2236,2237,2239,2240,2242,2243,2245,2246,2248,2249,2251,2252,2254,2255,2257,2258,2260,2261,2263,2264,2266,2267,2269,2270,2272,2273,2275,2276,2278,2279,2281,2282,2284,2285,2287,2288,2290,2291,2293,2294,2296,2297,2299,2300,2302,2303,2305,2306,2308,2309,2311,2312,2314,2315,2317,2318,2320,2321,2323,2324,2326,2327,2329,2330,2332,2333,2335,2336,2338,2339,2341,2342,2344,2345,2347,2348,2350,2351,2353,2354,2356,2357,2359,2360,2362,2363,2365,2366,2368,2369,2371,2372,2374,2375,2377,2378,2380,2381,2383,2384,2386,2387,2389,2390,2392,2393,2395,2396,2398,2399,2401,2402,2404,2405,2407,2408,2410,2411,2413,2414,2416,2417,2419,2420,2422,2423,2425,2426,2428,2429,2431,2432,2434,2435,2437,2438,2440,2441,2443,2444,2446,2447,2449,2450,2452,2453,2455,2456,2458,2459,2461,2462,2464,2465,2467,2468,2470,2471,2473,2474,2476,2477,2479,2480,2482,2483,2485,2486,2488,2489,2491,2492,2494,2495,2497,2498,2500,2501,2503,2504,2506,2507,2509,2510,2512,2513,2515,2516,2518,2519,2521,2522,2524,2525,2527,2528,2530,2531,2533,2534,2536,2537,2539,2540,2542,2543,2545,2546,2548,2549,2551,2552,2554,2555,2557,2558,2560,2561,2563,2564,2566,2567,2569,2570,2572,2573,2575,2576,2578,2579,2581,2582,2584,2585,2587,2588,2590,2591,2593,2594,2596,2597,2599,2600,2602,2603,2605,2606,2608,2609,2611,2612,2614,2615,2617,2618,2620,2621,2623,2624,2626,2627,2629,2630,2632,2633,2635,2636,2638,2639,2641,2642,2644,2645,2647,2648,2650,2651,2653,2654,2656,2657,2659,2660,2662,2663,2665,2666,2668,2669,2671,2672,2674,2675,2677,2678,2680,2681,2683,2684,2686,2687,2689,2690,2692,2693,2695,2696,2698,2699,2701,2702,2704,2705,2707,2708,2710,2711,2713,2714,2716,2717,2719,2720,2722,2723,2725,2726,2728,2729,2731,2732,2734,2735,2737,2738,2740,2741,2743,2744,2746,2747,2749,2750,2752,2753,2755,2756,2758,2759,2761,2762,2764,2765,2767,2768,2770,2771,2773,2774,2776,2777,2779,2780,2782,2783,2785,2786,2788,2789,2791,2792,2794,2795,2797,2798,2800,2801,2803,2804,2806,2807,2809,2810,2812,2813,2815,2816,2818,2819,2821,2822,2824,2825,2827,2828,2830,2831,2833,2834,2836,2837,2839,2840,2842,2843,2845,2846,2848,2849,2851,2852,2854,2855,2857,2858,2860,2861,2863,2864,2866,2867,2869,2870,2872,2873,2875,2876,2878,2879,2881,2882,2884,2885,2887,2888,2890,2891,2893,2894,2896,2897,2899,2900,2902,2903,2905,2906,2908,2909,2911,2912,2914,2915,2917,2918,2920,2921,2923,2924,2926,2927,2929,2930,2932,2933,2935,2936,2938,2939,2941,2942,2944,2945,2947,2948,2950,2951,2953,2954,2956,2957,2959,2960,2962,2963,2965,2966,2968,2969,2971,2972,2974,2975,2977,2978,2980,2981,2983,2984,2986,2987,2989,2990,2992,2993,2995,2996,2998,2999,3001,3002,3004,3005,3007,3008,3010,3011,3013,3014,3016,3017,3019,3020,3022,3023,3025,3026,3028,3029,3031,3032,3034,3035,3037,3038,3040,3041,3043,3044,3046,3047,3049,3050,3052,3053,3055,3056,3058,3059,3061,3062,3064,3065,3067,3068,3070,3071,3073,3074,3076,3077,3079,3080,3082,3083,3085,3086,3088,3089,3091,3092,3094,3095,3097,3098,3100,3101,3103,3104,3106,3107,3109,3110,3112,3113,3115,3116,3118,3119,3121,3122,3124,3125,3127,3128,3130,3131,3133,3134,3136,3137,3139,3140,3142,3143,3145,3146,3148,3149,3151,3152,3154,3155,3157,3158,3160,3161,3163,3164,3166,3167,3169,3170,3172,3173,3175,3176,3178,3179,3181,3182,3184,3185,3187,3188,3190,3191,3193,3194,3196,3197,3199,3200,3202,3203,3205,3206,3208,3209,3211,3212,3214,3215,3217,3218,3220,3221,3223,3224,3226,3227,3229,3230,3232,3233,3235,3236,3238,3239,3241,3242,3244,3245,3247,3248,3250,3251,3253,3254,3256,3257,3259,3260,3262,3263,3265,3266,3268,3269,3271,3272,3274,3275,3277,3278,3280,3281,3283,3284,3286,3287,3289,3290,3292,3293,3295,3296,3298,3299,3301,3302,3304,3305,3307,3308,3310,3311,3313,3314,3316,3317,3319,3320,3322,3323,3325,3326,3328,3329,3331,3332,3334,3335,3337,3338,3340,3341,3343,3344,3346,3347,3349,3350,3352,3353,3355,3356,3358,3359,3361,3362,3364,3365,3367,3368,3370,3371,3373,3374,3376,3377,3379,3380,3382,3383,3385,3386,3388,3389,3391,3392,3394,3395,3397,3398,3400,3401,3403,3404,3406,3407,3409,3410,3412,3413,3415,3416,3418,3419,3421,3422,3424,3425,3427,3428,3430,3431,3433,3434,3436,3437,3439,3440,3442,3443,3445,3446,3448,3449,3451,3452,3454,3455,3457,3458,3460,3461,3463,3464,3466,3467,3469,3470,3472,3473,3475,3476,3478,3479,3481,3482,3484,3485,3487,3488,3490,3491,3493,3494,3496,3497,3499,3500,3502,3503,3505,3506,3508,3509,3511,3512,3514,3515,3517,3518,3520,3521,3523,3524,3526,3527,3529,3530,3532,3533,3535,3536,3538,3539,3541,3542,3544,3545,3547,3548,3550,3551,3553,3554,3556,3557,3559,3560,3562,3563,3565,3566,3568,3569,3571,3572,3574,3575,3577,3578,3580,3581,3583,3584,3586,3587,3589,3590,3592,3593,3595,3596,3598,3599,3601,3602,3604,3605,3607,3608,3610,3611,3613,3614,3616,3617,3619,3620,3622,3623,3625,3626,3628,3629,3631,3632,3634,3635) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 582 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 583 | ] |
||
| 584 | }, |
||
| 585 | { |
||
| 586 | "name": "stdout", |
||
| 587 | "output_type": "stream", |
||
| 588 | "text": [ |
||
| 589 | "BRCA (20531, 1212)\n", |
||
| 590 | "gdac.broadinstitute.org_STES.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 STES\n" |
||
| 591 | ] |
||
| 592 | }, |
||
| 593 | { |
||
| 594 | "name": "stderr", |
||
| 595 | "output_type": "stream", |
||
| 596 | "text": [ |
||
| 597 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926,928,929,931,932,934,935,937,938,940,941,943,944,946,947,949,950,952,953,955,956,958,959,961,962,964,965,967,968,970,971,973,974,976,977,979,980,982,983,985,986,988,989,991,992,994,995,997,998,1000,1001,1003,1004,1006,1007,1009,1010,1012,1013,1015,1016,1018,1019,1021,1022,1024,1025,1027,1028,1030,1031,1033,1034,1036,1037,1039,1040,1042,1043,1045,1046,1048,1049,1051,1052,1054,1055,1057,1058,1060,1061,1063,1064,1066,1067,1069,1070,1072,1073,1075,1076,1078,1079,1081,1082,1084,1085,1087,1088,1090,1091,1093,1094,1096,1097,1099,1100,1102,1103,1105,1106,1108,1109,1111,1112,1114,1115,1117,1118,1120,1121,1123,1124,1126,1127,1129,1130,1132,1133,1135,1136,1138,1139,1141,1142,1144,1145,1147,1148,1150,1151,1153,1154,1156,1157,1159,1160,1162,1163,1165,1166,1168,1169,1171,1172,1174,1175,1177,1178,1180,1181,1183,1184,1186,1187,1189,1190,1192,1193,1195,1196,1198,1199,1201,1202,1204,1205,1207,1208,1210,1211,1213,1214,1216,1217,1219,1220,1222,1223,1225,1226,1228,1229,1231,1232,1234,1235,1237,1238,1240,1241,1243,1244,1246,1247,1249,1250,1252,1253,1255,1256,1258,1259,1261,1262,1264,1265,1267,1268,1270,1271,1273,1274,1276,1277,1279,1280,1282,1283,1285,1286,1288,1289,1291,1292,1294,1295,1297,1298,1300,1301,1303,1304,1306,1307,1309,1310,1312,1313,1315,1316,1318,1319,1321,1322,1324,1325,1327,1328,1330,1331,1333,1334,1336,1337,1339,1340,1342,1343,1345,1346,1348,1349,1351,1352,1354,1355,1357,1358,1360,1361,1363,1364,1366,1367,1369,1370,1372,1373,1375,1376,1378,1379,1381,1382,1384,1385,1387,1388,1390,1391,1393,1394,1396,1397,1399,1400,1402,1403,1405,1406,1408,1409,1411,1412,1414,1415,1417,1418,1420,1421,1423,1424,1426,1427,1429,1430,1432,1433,1435,1436,1438,1439,1441,1442,1444,1445,1447,1448,1450,1451,1453,1454,1456,1457,1459,1460,1462,1463,1465,1466,1468,1469,1471,1472,1474,1475,1477,1478,1480,1481,1483,1484,1486,1487,1489,1490,1492,1493,1495,1496,1498,1499,1501,1502,1504,1505,1507,1508,1510,1511,1513,1514,1516,1517,1519,1520,1522,1523,1525,1526,1528,1529,1531,1532,1534,1535,1537,1538,1540,1541,1543,1544,1546,1547,1549,1550,1552,1553,1555,1556,1558,1559,1561,1562,1564,1565,1567,1568,1570,1571,1573,1574,1576,1577,1579,1580,1582,1583,1585,1586,1588,1589,1591,1592,1594,1595,1597,1598,1600,1601,1603,1604,1606,1607,1609,1610,1612,1613,1615,1616,1618,1619,1621,1622,1624,1625,1627,1628,1630,1631,1633,1634,1636,1637,1639,1640,1642,1643,1645,1646,1648,1649,1651,1652,1654,1655,1657,1658,1660,1661,1663,1664,1666,1667,1669,1670,1672,1673,1675,1676,1678,1679,1681,1682,1684,1685,1687,1688,1690,1691,1693,1694,1696,1697,1699,1700,1702,1703,1705,1706,1708,1709,1711,1712,1714,1715,1717,1718,1720,1721,1723,1724,1726,1727,1729,1730,1732,1733,1735,1736,1738,1739,1741,1742,1744,1745,1747,1748,1750,1751,1753,1754,1756,1757,1759,1760,1762,1763,1765,1766,1768,1769,1771,1772,1774,1775,1777,1778,1780,1781,1783,1784,1786,1787,1789,1790,1792,1793,1795,1796,1798,1799,1801,1802,1804,1805,1807,1808,1810,1811,1813,1814,1816,1817,1819,1820,1822,1823,1825,1826,1828,1829,1831,1832,1834,1835,1837,1838,1840,1841,1843,1844,1846,1847,1849,1850,1852,1853,1855,1856,1858,1859,1861,1862,1864,1865,1867,1868,1870,1871,1873,1874,1876,1877,1879,1880,1882,1883,1885,1886,1888,1889,1891,1892,1894,1895,1897,1898,1900,1901,1903,1904,1906,1907,1909,1910,1912,1913,1915,1916,1918,1919,1921,1922,1924,1925,1927,1928,1930,1931,1933,1934,1936,1937) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 598 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 599 | ] |
||
| 600 | }, |
||
| 601 | { |
||
| 602 | "name": "stdout", |
||
| 603 | "output_type": "stream", |
||
| 604 | "text": [ |
||
| 605 | "STES (20531, 646)\n", |
||
| 606 | "gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 SKCM\n" |
||
| 607 | ] |
||
| 608 | }, |
||
| 609 | { |
||
| 610 | "name": "stderr", |
||
| 611 | "output_type": "stream", |
||
| 612 | "text": [ |
||
| 613 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926,928,929,931,932,934,935,937,938,940,941,943,944,946,947,949,950,952,953,955,956,958,959,961,962,964,965,967,968,970,971,973,974,976,977,979,980,982,983,985,986,988,989,991,992,994,995,997,998,1000,1001,1003,1004,1006,1007,1009,1010,1012,1013,1015,1016,1018,1019,1021,1022,1024,1025,1027,1028,1030,1031,1033,1034,1036,1037,1039,1040,1042,1043,1045,1046,1048,1049,1051,1052,1054,1055,1057,1058,1060,1061,1063,1064,1066,1067,1069,1070,1072,1073,1075,1076,1078,1079,1081,1082,1084,1085,1087,1088,1090,1091,1093,1094,1096,1097,1099,1100,1102,1103,1105,1106,1108,1109,1111,1112,1114,1115,1117,1118,1120,1121,1123,1124,1126,1127,1129,1130,1132,1133,1135,1136,1138,1139,1141,1142,1144,1145,1147,1148,1150,1151,1153,1154,1156,1157,1159,1160,1162,1163,1165,1166,1168,1169,1171,1172,1174,1175,1177,1178,1180,1181,1183,1184,1186,1187,1189,1190,1192,1193,1195,1196,1198,1199,1201,1202,1204,1205,1207,1208,1210,1211,1213,1214,1216,1217,1219,1220,1222,1223,1225,1226,1228,1229,1231,1232,1234,1235,1237,1238,1240,1241,1243,1244,1246,1247,1249,1250,1252,1253,1255,1256,1258,1259,1261,1262,1264,1265,1267,1268,1270,1271,1273,1274,1276,1277,1279,1280,1282,1283,1285,1286,1288,1289,1291,1292,1294,1295,1297,1298,1300,1301,1303,1304,1306,1307,1309,1310,1312,1313,1315,1316,1318,1319,1321,1322,1324,1325,1327,1328,1330,1331,1333,1334,1336,1337,1339,1340,1342,1343,1345,1346,1348,1349,1351,1352,1354,1355,1357,1358,1360,1361,1363,1364,1366,1367,1369,1370,1372,1373,1375,1376,1378,1379,1381,1382,1384,1385,1387,1388,1390,1391,1393,1394,1396,1397,1399,1400,1402,1403,1405,1406,1408,1409,1411,1412,1414,1415,1417,1418) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 614 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 615 | ] |
||
| 616 | }, |
||
| 617 | { |
||
| 618 | "name": "stdout", |
||
| 619 | "output_type": "stream", |
||
| 620 | "text": [ |
||
| 621 | "SKCM (20531, 473)\n", |
||
| 622 | "gdac.broadinstitute.org_PAAD.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 PAAD\n" |
||
| 623 | ] |
||
| 624 | }, |
||
| 625 | { |
||
| 626 | "name": "stderr", |
||
| 627 | "output_type": "stream", |
||
| 628 | "text": [ |
||
| 629 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 630 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 631 | ] |
||
| 632 | }, |
||
| 633 | { |
||
| 634 | "name": "stdout", |
||
| 635 | "output_type": "stream", |
||
| 636 | "text": [ |
||
| 637 | "PAAD (20531, 183)\n", |
||
| 638 | "gdac.broadinstitute.org_PCPG.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 PCPG\n" |
||
| 639 | ] |
||
| 640 | }, |
||
| 641 | { |
||
| 642 | "name": "stderr", |
||
| 643 | "output_type": "stream", |
||
| 644 | "text": [ |
||
| 645 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 646 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 647 | ] |
||
| 648 | }, |
||
| 649 | { |
||
| 650 | "name": "stdout", |
||
| 651 | "output_type": "stream", |
||
| 652 | "text": [ |
||
| 653 | "PCPG (20531, 187)\n", |
||
| 654 | "gdac.broadinstitute.org_UCS.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 UCS\n" |
||
| 655 | ] |
||
| 656 | }, |
||
| 657 | { |
||
| 658 | "name": "stderr", |
||
| 659 | "output_type": "stream", |
||
| 660 | "text": [ |
||
| 661 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 662 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 663 | ] |
||
| 664 | }, |
||
| 665 | { |
||
| 666 | "name": "stdout", |
||
| 667 | "output_type": "stream", |
||
| 668 | "text": [ |
||
| 669 | "UCS (20531, 57)\n", |
||
| 670 | "gdac.broadinstitute.org_THCA.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 THCA\n" |
||
| 671 | ] |
||
| 672 | }, |
||
| 673 | { |
||
| 674 | "name": "stderr", |
||
| 675 | "output_type": "stream", |
||
| 676 | "text": [ |
||
| 677 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926,928,929,931,932,934,935,937,938,940,941,943,944,946,947,949,950,952,953,955,956,958,959,961,962,964,965,967,968,970,971,973,974,976,977,979,980,982,983,985,986,988,989,991,992,994,995,997,998,1000,1001,1003,1004,1006,1007,1009,1010,1012,1013,1015,1016,1018,1019,1021,1022,1024,1025,1027,1028,1030,1031,1033,1034,1036,1037,1039,1040,1042,1043,1045,1046,1048,1049,1051,1052,1054,1055,1057,1058,1060,1061,1063,1064,1066,1067,1069,1070,1072,1073,1075,1076,1078,1079,1081,1082,1084,1085,1087,1088,1090,1091,1093,1094,1096,1097,1099,1100,1102,1103,1105,1106,1108,1109,1111,1112,1114,1115,1117,1118,1120,1121,1123,1124,1126,1127,1129,1130,1132,1133,1135,1136,1138,1139,1141,1142,1144,1145,1147,1148,1150,1151,1153,1154,1156,1157,1159,1160,1162,1163,1165,1166,1168,1169,1171,1172,1174,1175,1177,1178,1180,1181,1183,1184,1186,1187,1189,1190,1192,1193,1195,1196,1198,1199,1201,1202,1204,1205,1207,1208,1210,1211,1213,1214,1216,1217,1219,1220,1222,1223,1225,1226,1228,1229,1231,1232,1234,1235,1237,1238,1240,1241,1243,1244,1246,1247,1249,1250,1252,1253,1255,1256,1258,1259,1261,1262,1264,1265,1267,1268,1270,1271,1273,1274,1276,1277,1279,1280,1282,1283,1285,1286,1288,1289,1291,1292,1294,1295,1297,1298,1300,1301,1303,1304,1306,1307,1309,1310,1312,1313,1315,1316,1318,1319,1321,1322,1324,1325,1327,1328,1330,1331,1333,1334,1336,1337,1339,1340,1342,1343,1345,1346,1348,1349,1351,1352,1354,1355,1357,1358,1360,1361,1363,1364,1366,1367,1369,1370,1372,1373,1375,1376,1378,1379,1381,1382,1384,1385,1387,1388,1390,1391,1393,1394,1396,1397,1399,1400,1402,1403,1405,1406,1408,1409,1411,1412,1414,1415,1417,1418,1420,1421,1423,1424,1426,1427,1429,1430,1432,1433,1435,1436,1438,1439,1441,1442,1444,1445,1447,1448,1450,1451,1453,1454,1456,1457,1459,1460,1462,1463,1465,1466,1468,1469,1471,1472,1474,1475,1477,1478,1480,1481,1483,1484,1486,1487,1489,1490,1492,1493,1495,1496,1498,1499,1501,1502,1504,1505,1507,1508,1510,1511,1513,1514,1516,1517,1519,1520,1522,1523,1525,1526,1528,1529,1531,1532,1534,1535,1537,1538,1540,1541,1543,1544,1546,1547,1549,1550,1552,1553,1555,1556,1558,1559,1561,1562,1564,1565,1567,1568,1570,1571,1573,1574,1576,1577,1579,1580,1582,1583,1585,1586,1588,1589,1591,1592,1594,1595,1597,1598,1600,1601,1603,1604,1606,1607,1609,1610,1612,1613,1615,1616,1618,1619,1621,1622,1624,1625,1627,1628,1630,1631,1633,1634,1636,1637,1639,1640,1642,1643,1645,1646,1648,1649,1651,1652,1654,1655,1657,1658,1660,1661,1663,1664,1666,1667,1669,1670,1672,1673,1675,1676,1678,1679,1681,1682,1684,1685,1687,1688,1690,1691,1693,1694,1696,1697,1699,1700,1702,1703) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 678 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 679 | ] |
||
| 680 | }, |
||
| 681 | { |
||
| 682 | "name": "stdout", |
||
| 683 | "output_type": "stream", |
||
| 684 | "text": [ |
||
| 685 | "THCA (20531, 568)\n", |
||
| 686 | "gdac.broadinstitute.org_CESC.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 CESC\n" |
||
| 687 | ] |
||
| 688 | }, |
||
| 689 | { |
||
| 690 | "name": "stderr", |
||
| 691 | "output_type": "stream", |
||
| 692 | "text": [ |
||
| 693 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 694 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 695 | ] |
||
| 696 | }, |
||
| 697 | { |
||
| 698 | "name": "stdout", |
||
| 699 | "output_type": "stream", |
||
| 700 | "text": [ |
||
| 701 | "CESC (20531, 309)\n", |
||
| 702 | "gdac.broadinstitute.org_KIRP.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 KIRP\n" |
||
| 703 | ] |
||
| 704 | }, |
||
| 705 | { |
||
| 706 | "name": "stderr", |
||
| 707 | "output_type": "stream", |
||
| 708 | "text": [ |
||
| 709 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926,928,929,931,932,934,935,937,938,940,941,943,944,946,947,949,950,952,953,955,956,958,959,961,962,964,965,967,968) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 710 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 711 | ] |
||
| 712 | }, |
||
| 713 | { |
||
| 714 | "name": "stdout", |
||
| 715 | "output_type": "stream", |
||
| 716 | "text": [ |
||
| 717 | "KIRP (20531, 323)\n", |
||
| 718 | "gdac.broadinstitute.org_COAD.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 COAD\n" |
||
| 719 | ] |
||
| 720 | }, |
||
| 721 | { |
||
| 722 | "name": "stderr", |
||
| 723 | "output_type": "stream", |
||
| 724 | "text": [ |
||
| 725 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926,928,929,931,932,934,935,937,938,940,941,943,944,946,947,949,950,952,953,955,956,958,959,961,962,964,965,967,968,970,971,973,974,976,977,979,980,982,983) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 726 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 727 | ] |
||
| 728 | }, |
||
| 729 | { |
||
| 730 | "name": "stdout", |
||
| 731 | "output_type": "stream", |
||
| 732 | "text": [ |
||
| 733 | "COAD (20531, 328)\n", |
||
| 734 | "gdac.broadinstitute.org_KIRC.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 KIRC\n" |
||
| 735 | ] |
||
| 736 | }, |
||
| 737 | { |
||
| 738 | "name": "stderr", |
||
| 739 | "output_type": "stream", |
||
| 740 | "text": [ |
||
| 741 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926,928,929,931,932,934,935,937,938,940,941,943,944,946,947,949,950,952,953,955,956,958,959,961,962,964,965,967,968,970,971,973,974,976,977,979,980,982,983,985,986,988,989,991,992,994,995,997,998,1000,1001,1003,1004,1006,1007,1009,1010,1012,1013,1015,1016,1018,1019,1021,1022,1024,1025,1027,1028,1030,1031,1033,1034,1036,1037,1039,1040,1042,1043,1045,1046,1048,1049,1051,1052,1054,1055,1057,1058,1060,1061,1063,1064,1066,1067,1069,1070,1072,1073,1075,1076,1078,1079,1081,1082,1084,1085,1087,1088,1090,1091,1093,1094,1096,1097,1099,1100,1102,1103,1105,1106,1108,1109,1111,1112,1114,1115,1117,1118,1120,1121,1123,1124,1126,1127,1129,1130,1132,1133,1135,1136,1138,1139,1141,1142,1144,1145,1147,1148,1150,1151,1153,1154,1156,1157,1159,1160,1162,1163,1165,1166,1168,1169,1171,1172,1174,1175,1177,1178,1180,1181,1183,1184,1186,1187,1189,1190,1192,1193,1195,1196,1198,1199,1201,1202,1204,1205,1207,1208,1210,1211,1213,1214,1216,1217,1219,1220,1222,1223,1225,1226,1228,1229,1231,1232,1234,1235,1237,1238,1240,1241,1243,1244,1246,1247,1249,1250,1252,1253,1255,1256,1258,1259,1261,1262,1264,1265,1267,1268,1270,1271,1273,1274,1276,1277,1279,1280,1282,1283,1285,1286,1288,1289,1291,1292,1294,1295,1297,1298,1300,1301,1303,1304,1306,1307,1309,1310,1312,1313,1315,1316,1318,1319,1321,1322,1324,1325,1327,1328,1330,1331,1333,1334,1336,1337,1339,1340,1342,1343,1345,1346,1348,1349,1351,1352,1354,1355,1357,1358,1360,1361,1363,1364,1366,1367,1369,1370,1372,1373,1375,1376,1378,1379,1381,1382,1384,1385,1387,1388,1390,1391,1393,1394,1396,1397,1399,1400,1402,1403,1405,1406,1408,1409,1411,1412,1414,1415,1417,1418,1420,1421,1423,1424,1426,1427,1429,1430,1432,1433,1435,1436,1438,1439,1441,1442,1444,1445,1447,1448,1450,1451,1453,1454,1456,1457,1459,1460,1462,1463,1465,1466,1468,1469,1471,1472,1474,1475,1477,1478,1480,1481,1483,1484,1486,1487,1489,1490,1492,1493,1495,1496,1498,1499,1501,1502,1504,1505,1507,1508,1510,1511,1513,1514,1516,1517,1519,1520,1522,1523,1525,1526,1528,1529,1531,1532,1534,1535,1537,1538,1540,1541,1543,1544,1546,1547,1549,1550,1552,1553,1555,1556,1558,1559,1561,1562,1564,1565,1567,1568,1570,1571,1573,1574,1576,1577,1579,1580,1582,1583,1585,1586,1588,1589,1591,1592,1594,1595,1597,1598,1600,1601,1603,1604,1606,1607,1609,1610,1612,1613,1615,1616,1618,1619,1621,1622,1624,1625,1627,1628,1630,1631,1633,1634,1636,1637,1639,1640,1642,1643,1645,1646,1648,1649,1651,1652,1654,1655,1657,1658,1660,1661,1663,1664,1666,1667,1669,1670,1672,1673,1675,1676,1678,1679,1681,1682,1684,1685,1687,1688,1690,1691,1693,1694,1696,1697,1699,1700,1702,1703,1705,1706,1708,1709,1711,1712,1714,1715,1717,1718,1720,1721,1723,1724,1726,1727,1729,1730,1732,1733,1735,1736,1738,1739,1741,1742,1744,1745,1747,1748,1750,1751,1753,1754,1756,1757,1759,1760,1762,1763,1765,1766,1768,1769,1771,1772,1774,1775,1777,1778,1780,1781,1783,1784,1786,1787,1789,1790,1792,1793,1795,1796,1798,1799,1801,1802,1804,1805,1807,1808,1810,1811,1813,1814,1816,1817) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 742 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 743 | ] |
||
| 744 | }, |
||
| 745 | { |
||
| 746 | "name": "stdout", |
||
| 747 | "output_type": "stream", |
||
| 748 | "text": [ |
||
| 749 | "KIRC (20531, 606)\n", |
||
| 750 | "gdac.broadinstitute.org_THYM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 THYM\n" |
||
| 751 | ] |
||
| 752 | }, |
||
| 753 | { |
||
| 754 | "name": "stderr", |
||
| 755 | "output_type": "stream", |
||
| 756 | "text": [ |
||
| 757 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 758 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 759 | ] |
||
| 760 | }, |
||
| 761 | { |
||
| 762 | "name": "stdout", |
||
| 763 | "output_type": "stream", |
||
| 764 | "text": [ |
||
| 765 | "THYM (20531, 122)\n", |
||
| 766 | "gdac.broadinstitute.org_LIHC.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 LIHC\n" |
||
| 767 | ] |
||
| 768 | }, |
||
| 769 | { |
||
| 770 | "name": "stderr", |
||
| 771 | "output_type": "stream", |
||
| 772 | "text": [ |
||
| 773 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926,928,929,931,932,934,935,937,938,940,941,943,944,946,947,949,950,952,953,955,956,958,959,961,962,964,965,967,968,970,971,973,974,976,977,979,980,982,983,985,986,988,989,991,992,994,995,997,998,1000,1001,1003,1004,1006,1007,1009,1010,1012,1013,1015,1016,1018,1019,1021,1022,1024,1025,1027,1028,1030,1031,1033,1034,1036,1037,1039,1040,1042,1043,1045,1046,1048,1049,1051,1052,1054,1055,1057,1058,1060,1061,1063,1064,1066,1067,1069,1070,1072,1073,1075,1076,1078,1079,1081,1082,1084,1085,1087,1088,1090,1091,1093,1094,1096,1097,1099,1100,1102,1103,1105,1106,1108,1109,1111,1112,1114,1115,1117,1118,1120,1121,1123,1124,1126,1127,1129,1130,1132,1133,1135,1136,1138,1139,1141,1142,1144,1145,1147,1148,1150,1151,1153,1154,1156,1157,1159,1160,1162,1163,1165,1166,1168,1169,1171,1172,1174,1175,1177,1178,1180,1181,1183,1184,1186,1187,1189,1190,1192,1193,1195,1196,1198,1199,1201,1202,1204,1205,1207,1208,1210,1211,1213,1214,1216,1217,1219,1220,1222,1223,1225,1226,1228,1229,1231,1232,1234,1235,1237,1238,1240,1241,1243,1244,1246,1247,1249,1250,1252,1253,1255,1256,1258,1259,1261,1262,1264,1265,1267,1268) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 774 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 775 | ] |
||
| 776 | }, |
||
| 777 | { |
||
| 778 | "name": "stdout", |
||
| 779 | "output_type": "stream", |
||
| 780 | "text": [ |
||
| 781 | "LIHC (20531, 423)\n", |
||
| 782 | "gdac.broadinstitute.org_READ.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 READ\n" |
||
| 783 | ] |
||
| 784 | }, |
||
| 785 | { |
||
| 786 | "name": "stderr", |
||
| 787 | "output_type": "stream", |
||
| 788 | "text": [ |
||
| 789 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 790 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 791 | ] |
||
| 792 | }, |
||
| 793 | { |
||
| 794 | "name": "stdout", |
||
| 795 | "output_type": "stream", |
||
| 796 | "text": [ |
||
| 797 | "READ (20531, 105)\n", |
||
| 798 | "gdac.broadinstitute.org_GBM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 GBM\n" |
||
| 799 | ] |
||
| 800 | }, |
||
| 801 | { |
||
| 802 | "name": "stderr", |
||
| 803 | "output_type": "stream", |
||
| 804 | "text": [ |
||
| 805 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 806 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 807 | ] |
||
| 808 | }, |
||
| 809 | { |
||
| 810 | "name": "stdout", |
||
| 811 | "output_type": "stream", |
||
| 812 | "text": [ |
||
| 813 | "GBM (20531, 171)\n", |
||
| 814 | "gdac.broadinstitute.org_LUAD.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 LUAD\n" |
||
| 815 | ] |
||
| 816 | }, |
||
| 817 | { |
||
| 818 | "name": "stderr", |
||
| 819 | "output_type": "stream", |
||
| 820 | "text": [ |
||
| 821 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926,928,929,931,932,934,935,937,938,940,941,943,944,946,947,949,950,952,953,955,956,958,959,961,962,964,965,967,968,970,971,973,974,976,977,979,980,982,983,985,986,988,989,991,992,994,995,997,998,1000,1001,1003,1004,1006,1007,1009,1010,1012,1013,1015,1016,1018,1019,1021,1022,1024,1025,1027,1028,1030,1031,1033,1034,1036,1037,1039,1040,1042,1043,1045,1046,1048,1049,1051,1052,1054,1055,1057,1058,1060,1061,1063,1064,1066,1067,1069,1070,1072,1073,1075,1076,1078,1079,1081,1082,1084,1085,1087,1088,1090,1091,1093,1094,1096,1097,1099,1100,1102,1103,1105,1106,1108,1109,1111,1112,1114,1115,1117,1118,1120,1121,1123,1124,1126,1127,1129,1130,1132,1133,1135,1136,1138,1139,1141,1142,1144,1145,1147,1148,1150,1151,1153,1154,1156,1157,1159,1160,1162,1163,1165,1166,1168,1169,1171,1172,1174,1175,1177,1178,1180,1181,1183,1184,1186,1187,1189,1190,1192,1193,1195,1196,1198,1199,1201,1202,1204,1205,1207,1208,1210,1211,1213,1214,1216,1217,1219,1220,1222,1223,1225,1226,1228,1229,1231,1232,1234,1235,1237,1238,1240,1241,1243,1244,1246,1247,1249,1250,1252,1253,1255,1256,1258,1259,1261,1262,1264,1265,1267,1268,1270,1271,1273,1274,1276,1277,1279,1280,1282,1283,1285,1286,1288,1289,1291,1292,1294,1295,1297,1298,1300,1301,1303,1304,1306,1307,1309,1310,1312,1313,1315,1316,1318,1319,1321,1322,1324,1325,1327,1328,1330,1331,1333,1334,1336,1337,1339,1340,1342,1343,1345,1346,1348,1349,1351,1352,1354,1355,1357,1358,1360,1361,1363,1364,1366,1367,1369,1370,1372,1373,1375,1376,1378,1379,1381,1382,1384,1385,1387,1388,1390,1391,1393,1394,1396,1397,1399,1400,1402,1403,1405,1406,1408,1409,1411,1412,1414,1415,1417,1418,1420,1421,1423,1424,1426,1427,1429,1430,1432,1433,1435,1436,1438,1439,1441,1442,1444,1445,1447,1448,1450,1451,1453,1454,1456,1457,1459,1460,1462,1463,1465,1466,1468,1469,1471,1472,1474,1475,1477,1478,1480,1481,1483,1484,1486,1487,1489,1490,1492,1493,1495,1496,1498,1499,1501,1502,1504,1505,1507,1508,1510,1511,1513,1514,1516,1517,1519,1520,1522,1523,1525,1526,1528,1529,1531,1532,1534,1535,1537,1538,1540,1541,1543,1544,1546,1547,1549,1550,1552,1553,1555,1556,1558,1559,1561,1562,1564,1565,1567,1568,1570,1571,1573,1574,1576,1577,1579,1580,1582,1583,1585,1586,1588,1589,1591,1592,1594,1595,1597,1598,1600,1601,1603,1604,1606,1607,1609,1610,1612,1613,1615,1616,1618,1619,1621,1622,1624,1625,1627,1628,1630,1631,1633,1634,1636,1637,1639,1640,1642,1643,1645,1646,1648,1649,1651,1652,1654,1655,1657,1658,1660,1661,1663,1664,1666,1667,1669,1670,1672,1673,1675,1676,1678,1679,1681,1682,1684,1685,1687,1688,1690,1691,1693,1694,1696,1697,1699,1700,1702,1703,1705,1706,1708,1709,1711,1712,1714,1715,1717,1718,1720,1721,1723,1724,1726,1727) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 822 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 823 | ] |
||
| 824 | }, |
||
| 825 | { |
||
| 826 | "name": "stdout", |
||
| 827 | "output_type": "stream", |
||
| 828 | "text": [ |
||
| 829 | "LUAD (20531, 576)\n", |
||
| 830 | "gdac.broadinstitute.org_DLBC.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 DLBC\n" |
||
| 831 | ] |
||
| 832 | }, |
||
| 833 | { |
||
| 834 | "name": "stderr", |
||
| 835 | "output_type": "stream", |
||
| 836 | "text": [ |
||
| 837 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 838 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 839 | ] |
||
| 840 | }, |
||
| 841 | { |
||
| 842 | "name": "stdout", |
||
| 843 | "output_type": "stream", |
||
| 844 | "text": [ |
||
| 845 | "DLBC (20531, 48)\n", |
||
| 846 | "gdac.broadinstitute.org_KICH.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 KICH\n" |
||
| 847 | ] |
||
| 848 | }, |
||
| 849 | { |
||
| 850 | "name": "stderr", |
||
| 851 | "output_type": "stream", |
||
| 852 | "text": [ |
||
| 853 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 854 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 855 | ] |
||
| 856 | }, |
||
| 857 | { |
||
| 858 | "name": "stdout", |
||
| 859 | "output_type": "stream", |
||
| 860 | "text": [ |
||
| 861 | "KICH (20531, 91)\n", |
||
| 862 | "gdac.broadinstitute.org_CHOL.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 CHOL\n" |
||
| 863 | ] |
||
| 864 | }, |
||
| 865 | { |
||
| 866 | "name": "stderr", |
||
| 867 | "output_type": "stream", |
||
| 868 | "text": [ |
||
| 869 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 870 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 871 | ] |
||
| 872 | }, |
||
| 873 | { |
||
| 874 | "name": "stdout", |
||
| 875 | "output_type": "stream", |
||
| 876 | "text": [ |
||
| 877 | "CHOL (20531, 45)\n", |
||
| 878 | "gdac.broadinstitute.org_UVM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 UVM\n" |
||
| 879 | ] |
||
| 880 | }, |
||
| 881 | { |
||
| 882 | "name": "stderr", |
||
| 883 | "output_type": "stream", |
||
| 884 | "text": [ |
||
| 885 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 886 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 887 | ] |
||
| 888 | }, |
||
| 889 | { |
||
| 890 | "name": "stdout", |
||
| 891 | "output_type": "stream", |
||
| 892 | "text": [ |
||
| 893 | "UVM (20531, 80)\n", |
||
| 894 | "gdac.broadinstitute.org_PRAD.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 PRAD\n" |
||
| 895 | ] |
||
| 896 | }, |
||
| 897 | { |
||
| 898 | "name": "stderr", |
||
| 899 | "output_type": "stream", |
||
| 900 | "text": [ |
||
| 901 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926,928,929,931,932,934,935,937,938,940,941,943,944,946,947,949,950,952,953,955,956,958,959,961,962,964,965,967,968,970,971,973,974,976,977,979,980,982,983,985,986,988,989,991,992,994,995,997,998,1000,1001,1003,1004,1006,1007,1009,1010,1012,1013,1015,1016,1018,1019,1021,1022,1024,1025,1027,1028,1030,1031,1033,1034,1036,1037,1039,1040,1042,1043,1045,1046,1048,1049,1051,1052,1054,1055,1057,1058,1060,1061,1063,1064,1066,1067,1069,1070,1072,1073,1075,1076,1078,1079,1081,1082,1084,1085,1087,1088,1090,1091,1093,1094,1096,1097,1099,1100,1102,1103,1105,1106,1108,1109,1111,1112,1114,1115,1117,1118,1120,1121,1123,1124,1126,1127,1129,1130,1132,1133,1135,1136,1138,1139,1141,1142,1144,1145,1147,1148,1150,1151,1153,1154,1156,1157,1159,1160,1162,1163,1165,1166,1168,1169,1171,1172,1174,1175,1177,1178,1180,1181,1183,1184,1186,1187,1189,1190,1192,1193,1195,1196,1198,1199,1201,1202,1204,1205,1207,1208,1210,1211,1213,1214,1216,1217,1219,1220,1222,1223,1225,1226,1228,1229,1231,1232,1234,1235,1237,1238,1240,1241,1243,1244,1246,1247,1249,1250,1252,1253,1255,1256,1258,1259,1261,1262,1264,1265,1267,1268,1270,1271,1273,1274,1276,1277,1279,1280,1282,1283,1285,1286,1288,1289,1291,1292,1294,1295,1297,1298,1300,1301,1303,1304,1306,1307,1309,1310,1312,1313,1315,1316,1318,1319,1321,1322,1324,1325,1327,1328,1330,1331,1333,1334,1336,1337,1339,1340,1342,1343,1345,1346,1348,1349,1351,1352,1354,1355,1357,1358,1360,1361,1363,1364,1366,1367,1369,1370,1372,1373,1375,1376,1378,1379,1381,1382,1384,1385,1387,1388,1390,1391,1393,1394,1396,1397,1399,1400,1402,1403,1405,1406,1408,1409,1411,1412,1414,1415,1417,1418,1420,1421,1423,1424,1426,1427,1429,1430,1432,1433,1435,1436,1438,1439,1441,1442,1444,1445,1447,1448,1450,1451,1453,1454,1456,1457,1459,1460,1462,1463,1465,1466,1468,1469,1471,1472,1474,1475,1477,1478,1480,1481,1483,1484,1486,1487,1489,1490,1492,1493,1495,1496,1498,1499,1501,1502,1504,1505,1507,1508,1510,1511,1513,1514,1516,1517,1519,1520,1522,1523,1525,1526,1528,1529,1531,1532,1534,1535,1537,1538,1540,1541,1543,1544,1546,1547,1549,1550,1552,1553,1555,1556,1558,1559,1561,1562,1564,1565,1567,1568,1570,1571,1573,1574,1576,1577,1579,1580,1582,1583,1585,1586,1588,1589,1591,1592,1594,1595,1597,1598,1600,1601,1603,1604,1606,1607,1609,1610,1612,1613,1615,1616,1618,1619,1621,1622,1624,1625,1627,1628,1630,1631,1633,1634,1636,1637,1639,1640,1642,1643,1645,1646,1648,1649) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 902 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 903 | ] |
||
| 904 | }, |
||
| 905 | { |
||
| 906 | "name": "stdout", |
||
| 907 | "output_type": "stream", |
||
| 908 | "text": [ |
||
| 909 | "PRAD (20531, 550)\n", |
||
| 910 | "gdac.broadinstitute.org_UCEC.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 UCEC\n" |
||
| 911 | ] |
||
| 912 | }, |
||
| 913 | { |
||
| 914 | "name": "stderr", |
||
| 915 | "output_type": "stream", |
||
| 916 | "text": [ |
||
| 917 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 918 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 919 | ] |
||
| 920 | }, |
||
| 921 | { |
||
| 922 | "name": "stdout", |
||
| 923 | "output_type": "stream", |
||
| 924 | "text": [ |
||
| 925 | "UCEC (20531, 201)\n", |
||
| 926 | "gdac.broadinstitute.org_SARC.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 SARC\n" |
||
| 927 | ] |
||
| 928 | }, |
||
| 929 | { |
||
| 930 | "name": "stderr", |
||
| 931 | "output_type": "stream", |
||
| 932 | "text": [ |
||
| 933 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 934 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 935 | ] |
||
| 936 | }, |
||
| 937 | { |
||
| 938 | "name": "stdout", |
||
| 939 | "output_type": "stream", |
||
| 940 | "text": [ |
||
| 941 | "SARC (20531, 265)\n", |
||
| 942 | "gdac.broadinstitute.org_TGCT.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 TGCT\n" |
||
| 943 | ] |
||
| 944 | }, |
||
| 945 | { |
||
| 946 | "name": "stderr", |
||
| 947 | "output_type": "stream", |
||
| 948 | "text": [ |
||
| 949 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 950 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 951 | ] |
||
| 952 | }, |
||
| 953 | { |
||
| 954 | "name": "stdout", |
||
| 955 | "output_type": "stream", |
||
| 956 | "text": [ |
||
| 957 | "TGCT (20531, 156)\n", |
||
| 958 | "gdac.broadinstitute.org_LGG.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 LGG\n" |
||
| 959 | ] |
||
| 960 | }, |
||
| 961 | { |
||
| 962 | "name": "stderr", |
||
| 963 | "output_type": "stream", |
||
| 964 | "text": [ |
||
| 965 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926,928,929,931,932,934,935,937,938,940,941,943,944,946,947,949,950,952,953,955,956,958,959,961,962,964,965,967,968,970,971,973,974,976,977,979,980,982,983,985,986,988,989,991,992,994,995,997,998,1000,1001,1003,1004,1006,1007,1009,1010,1012,1013,1015,1016,1018,1019,1021,1022,1024,1025,1027,1028,1030,1031,1033,1034,1036,1037,1039,1040,1042,1043,1045,1046,1048,1049,1051,1052,1054,1055,1057,1058,1060,1061,1063,1064,1066,1067,1069,1070,1072,1073,1075,1076,1078,1079,1081,1082,1084,1085,1087,1088,1090,1091,1093,1094,1096,1097,1099,1100,1102,1103,1105,1106,1108,1109,1111,1112,1114,1115,1117,1118,1120,1121,1123,1124,1126,1127,1129,1130,1132,1133,1135,1136,1138,1139,1141,1142,1144,1145,1147,1148,1150,1151,1153,1154,1156,1157,1159,1160,1162,1163,1165,1166,1168,1169,1171,1172,1174,1175,1177,1178,1180,1181,1183,1184,1186,1187,1189,1190,1192,1193,1195,1196,1198,1199,1201,1202,1204,1205,1207,1208,1210,1211,1213,1214,1216,1217,1219,1220,1222,1223,1225,1226,1228,1229,1231,1232,1234,1235,1237,1238,1240,1241,1243,1244,1246,1247,1249,1250,1252,1253,1255,1256,1258,1259,1261,1262,1264,1265,1267,1268,1270,1271,1273,1274,1276,1277,1279,1280,1282,1283,1285,1286,1288,1289,1291,1292,1294,1295,1297,1298,1300,1301,1303,1304,1306,1307,1309,1310,1312,1313,1315,1316,1318,1319,1321,1322,1324,1325,1327,1328,1330,1331,1333,1334,1336,1337,1339,1340,1342,1343,1345,1346,1348,1349,1351,1352,1354,1355,1357,1358,1360,1361,1363,1364,1366,1367,1369,1370,1372,1373,1375,1376,1378,1379,1381,1382,1384,1385,1387,1388,1390,1391,1393,1394,1396,1397,1399,1400,1402,1403,1405,1406,1408,1409,1411,1412,1414,1415,1417,1418,1420,1421,1423,1424,1426,1427,1429,1430,1432,1433,1435,1436,1438,1439,1441,1442,1444,1445,1447,1448,1450,1451,1453,1454,1456,1457,1459,1460,1462,1463,1465,1466,1468,1469,1471,1472,1474,1475,1477,1478,1480,1481,1483,1484,1486,1487,1489,1490,1492,1493,1495,1496,1498,1499,1501,1502,1504,1505,1507,1508,1510,1511,1513,1514,1516,1517,1519,1520,1522,1523,1525,1526,1528,1529,1531,1532,1534,1535,1537,1538,1540,1541,1543,1544,1546,1547,1549,1550,1552,1553,1555,1556,1558,1559,1561,1562,1564,1565,1567,1568,1570,1571,1573,1574,1576,1577,1579,1580,1582,1583,1585,1586,1588,1589) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 966 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 967 | ] |
||
| 968 | }, |
||
| 969 | { |
||
| 970 | "name": "stdout", |
||
| 971 | "output_type": "stream", |
||
| 972 | "text": [ |
||
| 973 | "LGG (20531, 530)\n", |
||
| 974 | "gdac.broadinstitute.org_ESCA.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 ESCA\n" |
||
| 975 | ] |
||
| 976 | }, |
||
| 977 | { |
||
| 978 | "name": "stderr", |
||
| 979 | "output_type": "stream", |
||
| 980 | "text": [ |
||
| 981 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 982 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 983 | ] |
||
| 984 | }, |
||
| 985 | { |
||
| 986 | "name": "stdout", |
||
| 987 | "output_type": "stream", |
||
| 988 | "text": [ |
||
| 989 | "ESCA (20531, 196)\n", |
||
| 990 | "gdac.broadinstitute.org_ACC.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 ACC\n" |
||
| 991 | ] |
||
| 992 | }, |
||
| 993 | { |
||
| 994 | "name": "stderr", |
||
| 995 | "output_type": "stream", |
||
| 996 | "text": [ |
||
| 997 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 998 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 999 | ] |
||
| 1000 | }, |
||
| 1001 | { |
||
| 1002 | "name": "stdout", |
||
| 1003 | "output_type": "stream", |
||
| 1004 | "text": [ |
||
| 1005 | "ACC (20531, 79)\n", |
||
| 1006 | "gdac.broadinstitute.org_LAML.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 LAML\n" |
||
| 1007 | ] |
||
| 1008 | }, |
||
| 1009 | { |
||
| 1010 | "name": "stderr", |
||
| 1011 | "output_type": "stream", |
||
| 1012 | "text": [ |
||
| 1013 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 1014 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 1015 | ] |
||
| 1016 | }, |
||
| 1017 | { |
||
| 1018 | "name": "stdout", |
||
| 1019 | "output_type": "stream", |
||
| 1020 | "text": [ |
||
| 1021 | "LAML (20531, 173)\n", |
||
| 1022 | "gdac.broadinstitute.org_HNSC.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 HNSC\n" |
||
| 1023 | ] |
||
| 1024 | }, |
||
| 1025 | { |
||
| 1026 | "name": "stderr", |
||
| 1027 | "output_type": "stream", |
||
| 1028 | "text": [ |
||
| 1029 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926,928,929,931,932,934,935,937,938,940,941,943,944,946,947,949,950,952,953,955,956,958,959,961,962,964,965,967,968,970,971,973,974,976,977,979,980,982,983,985,986,988,989,991,992,994,995,997,998,1000,1001,1003,1004,1006,1007,1009,1010,1012,1013,1015,1016,1018,1019,1021,1022,1024,1025,1027,1028,1030,1031,1033,1034,1036,1037,1039,1040,1042,1043,1045,1046,1048,1049,1051,1052,1054,1055,1057,1058,1060,1061,1063,1064,1066,1067,1069,1070,1072,1073,1075,1076,1078,1079,1081,1082,1084,1085,1087,1088,1090,1091,1093,1094,1096,1097,1099,1100,1102,1103,1105,1106,1108,1109,1111,1112,1114,1115,1117,1118,1120,1121,1123,1124,1126,1127,1129,1130,1132,1133,1135,1136,1138,1139,1141,1142,1144,1145,1147,1148,1150,1151,1153,1154,1156,1157,1159,1160,1162,1163,1165,1166,1168,1169,1171,1172,1174,1175,1177,1178,1180,1181,1183,1184,1186,1187,1189,1190,1192,1193,1195,1196,1198,1199,1201,1202,1204,1205,1207,1208,1210,1211,1213,1214,1216,1217,1219,1220,1222,1223,1225,1226,1228,1229,1231,1232,1234,1235,1237,1238,1240,1241,1243,1244,1246,1247,1249,1250,1252,1253,1255,1256,1258,1259,1261,1262,1264,1265,1267,1268,1270,1271,1273,1274,1276,1277,1279,1280,1282,1283,1285,1286,1288,1289,1291,1292,1294,1295,1297,1298,1300,1301,1303,1304,1306,1307,1309,1310,1312,1313,1315,1316,1318,1319,1321,1322,1324,1325,1327,1328,1330,1331,1333,1334,1336,1337,1339,1340,1342,1343,1345,1346,1348,1349,1351,1352,1354,1355,1357,1358,1360,1361,1363,1364,1366,1367,1369,1370,1372,1373,1375,1376,1378,1379,1381,1382,1384,1385,1387,1388,1390,1391,1393,1394,1396,1397,1399,1400,1402,1403,1405,1406,1408,1409,1411,1412,1414,1415,1417,1418,1420,1421,1423,1424,1426,1427,1429,1430,1432,1433,1435,1436,1438,1439,1441,1442,1444,1445,1447,1448,1450,1451,1453,1454,1456,1457,1459,1460,1462,1463,1465,1466,1468,1469,1471,1472,1474,1475,1477,1478,1480,1481,1483,1484,1486,1487,1489,1490,1492,1493,1495,1496,1498,1499,1501,1502,1504,1505,1507,1508,1510,1511,1513,1514,1516,1517,1519,1520,1522,1523,1525,1526,1528,1529,1531,1532,1534,1535,1537,1538,1540,1541,1543,1544,1546,1547,1549,1550,1552,1553,1555,1556,1558,1559,1561,1562,1564,1565,1567,1568,1570,1571,1573,1574,1576,1577,1579,1580,1582,1583,1585,1586,1588,1589,1591,1592,1594,1595,1597,1598,1600,1601,1603,1604,1606,1607,1609,1610,1612,1613,1615,1616,1618,1619,1621,1622,1624,1625,1627,1628,1630,1631,1633,1634,1636,1637,1639,1640,1642,1643,1645,1646,1648,1649,1651,1652,1654,1655,1657,1658,1660,1661,1663,1664,1666,1667,1669,1670,1672,1673,1675,1676,1678,1679,1681,1682,1684,1685,1687,1688,1690,1691,1693,1694,1696,1697) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 1030 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 1031 | ] |
||
| 1032 | }, |
||
| 1033 | { |
||
| 1034 | "name": "stdout", |
||
| 1035 | "output_type": "stream", |
||
| 1036 | "text": [ |
||
| 1037 | "HNSC (20531, 566)\n", |
||
| 1038 | "gdac.broadinstitute.org_MESO.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 MESO\n" |
||
| 1039 | ] |
||
| 1040 | }, |
||
| 1041 | { |
||
| 1042 | "name": "stderr", |
||
| 1043 | "output_type": "stream", |
||
| 1044 | "text": [ |
||
| 1045 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 1046 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 1047 | ] |
||
| 1048 | }, |
||
| 1049 | { |
||
| 1050 | "name": "stdout", |
||
| 1051 | "output_type": "stream", |
||
| 1052 | "text": [ |
||
| 1053 | "MESO (20531, 87)\n", |
||
| 1054 | "gdac.broadinstitute.org_STAD.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 STAD\n" |
||
| 1055 | ] |
||
| 1056 | }, |
||
| 1057 | { |
||
| 1058 | "name": "stderr", |
||
| 1059 | "output_type": "stream", |
||
| 1060 | "text": [ |
||
| 1061 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926,928,929,931,932,934,935,937,938,940,941,943,944,946,947,949,950,952,953,955,956,958,959,961,962,964,965,967,968,970,971,973,974,976,977,979,980,982,983,985,986,988,989,991,992,994,995,997,998,1000,1001,1003,1004,1006,1007,1009,1010,1012,1013,1015,1016,1018,1019,1021,1022,1024,1025,1027,1028,1030,1031,1033,1034,1036,1037,1039,1040,1042,1043,1045,1046,1048,1049,1051,1052,1054,1055,1057,1058,1060,1061,1063,1064,1066,1067,1069,1070,1072,1073,1075,1076,1078,1079,1081,1082,1084,1085,1087,1088,1090,1091,1093,1094,1096,1097,1099,1100,1102,1103,1105,1106,1108,1109,1111,1112,1114,1115,1117,1118,1120,1121,1123,1124,1126,1127,1129,1130,1132,1133,1135,1136,1138,1139,1141,1142,1144,1145,1147,1148,1150,1151,1153,1154,1156,1157,1159,1160,1162,1163,1165,1166,1168,1169,1171,1172,1174,1175,1177,1178,1180,1181,1183,1184,1186,1187,1189,1190,1192,1193,1195,1196,1198,1199,1201,1202,1204,1205,1207,1208,1210,1211,1213,1214,1216,1217,1219,1220,1222,1223,1225,1226,1228,1229,1231,1232,1234,1235,1237,1238,1240,1241,1243,1244,1246,1247,1249,1250,1252,1253,1255,1256,1258,1259,1261,1262,1264,1265,1267,1268,1270,1271,1273,1274,1276,1277,1279,1280,1282,1283,1285,1286,1288,1289,1291,1292,1294,1295,1297,1298,1300,1301,1303,1304,1306,1307,1309,1310,1312,1313,1315,1316,1318,1319,1321,1322,1324,1325,1327,1328,1330,1331,1333,1334,1336,1337,1339,1340,1342,1343,1345,1346,1348,1349) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 1062 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 1063 | ] |
||
| 1064 | }, |
||
| 1065 | { |
||
| 1066 | "name": "stdout", |
||
| 1067 | "output_type": "stream", |
||
| 1068 | "text": [ |
||
| 1069 | "STAD (20531, 450)\n", |
||
| 1070 | "gdac.broadinstitute.org_OV.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 OV\n" |
||
| 1071 | ] |
||
| 1072 | }, |
||
| 1073 | { |
||
| 1074 | "name": "stderr", |
||
| 1075 | "output_type": "stream", |
||
| 1076 | "text": [ |
||
| 1077 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 1078 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 1079 | ] |
||
| 1080 | }, |
||
| 1081 | { |
||
| 1082 | "name": "stdout", |
||
| 1083 | "output_type": "stream", |
||
| 1084 | "text": [ |
||
| 1085 | "OV (20531, 307)\n", |
||
| 1086 | "gdac.broadinstitute.org_BLCA.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0 BLCA\n" |
||
| 1087 | ] |
||
| 1088 | }, |
||
| 1089 | { |
||
| 1090 | "name": "stderr", |
||
| 1091 | "output_type": "stream", |
||
| 1092 | "text": [ |
||
| 1093 | "/home/olya/miniconda2/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2714: DtypeWarning: Columns (1,2,4,5,7,8,10,11,13,14,16,17,19,20,22,23,25,26,28,29,31,32,34,35,37,38,40,41,43,44,46,47,49,50,52,53,55,56,58,59,61,62,64,65,67,68,70,71,73,74,76,77,79,80,82,83,85,86,88,89,91,92,94,95,97,98,100,101,103,104,106,107,109,110,112,113,115,116,118,119,121,122,124,125,127,128,130,131,133,134,136,137,139,140,142,143,145,146,148,149,151,152,154,155,157,158,160,161,163,164,166,167,169,170,172,173,175,176,178,179,181,182,184,185,187,188,190,191,193,194,196,197,199,200,202,203,205,206,208,209,211,212,214,215,217,218,220,221,223,224,226,227,229,230,232,233,235,236,238,239,241,242,244,245,247,248,250,251,253,254,256,257,259,260,262,263,265,266,268,269,271,272,274,275,277,278,280,281,283,284,286,287,289,290,292,293,295,296,298,299,301,302,304,305,307,308,310,311,313,314,316,317,319,320,322,323,325,326,328,329,331,332,334,335,337,338,340,341,343,344,346,347,349,350,352,353,355,356,358,359,361,362,364,365,367,368,370,371,373,374,376,377,379,380,382,383,385,386,388,389,391,392,394,395,397,398,400,401,403,404,406,407,409,410,412,413,415,416,418,419,421,422,424,425,427,428,430,431,433,434,436,437,439,440,442,443,445,446,448,449,451,452,454,455,457,458,460,461,463,464,466,467,469,470,472,473,475,476,478,479,481,482,484,485,487,488,490,491,493,494,496,497,499,500,502,503,505,506,508,509,511,512,514,515,517,518,520,521,523,524,526,527,529,530,532,533,535,536,538,539,541,542,544,545,547,548,550,551,553,554,556,557,559,560,562,563,565,566,568,569,571,572,574,575,577,578,580,581,583,584,586,587,589,590,592,593,595,596,598,599,601,602,604,605,607,608,610,611,613,614,616,617,619,620,622,623,625,626,628,629,631,632,634,635,637,638,640,641,643,644,646,647,649,650,652,653,655,656,658,659,661,662,664,665,667,668,670,671,673,674,676,677,679,680,682,683,685,686,688,689,691,692,694,695,697,698,700,701,703,704,706,707,709,710,712,713,715,716,718,719,721,722,724,725,727,728,730,731,733,734,736,737,739,740,742,743,745,746,748,749,751,752,754,755,757,758,760,761,763,764,766,767,769,770,772,773,775,776,778,779,781,782,784,785,787,788,790,791,793,794,796,797,799,800,802,803,805,806,808,809,811,812,814,815,817,818,820,821,823,824,826,827,829,830,832,833,835,836,838,839,841,842,844,845,847,848,850,851,853,854,856,857,859,860,862,863,865,866,868,869,871,872,874,875,877,878,880,881,883,884,886,887,889,890,892,893,895,896,898,899,901,902,904,905,907,908,910,911,913,914,916,917,919,920,922,923,925,926,928,929,931,932,934,935,937,938,940,941,943,944,946,947,949,950,952,953,955,956,958,959,961,962,964,965,967,968,970,971,973,974,976,977,979,980,982,983,985,986,988,989,991,992,994,995,997,998,1000,1001,1003,1004,1006,1007,1009,1010,1012,1013,1015,1016,1018,1019,1021,1022,1024,1025,1027,1028,1030,1031,1033,1034,1036,1037,1039,1040,1042,1043,1045,1046,1048,1049,1051,1052,1054,1055,1057,1058,1060,1061,1063,1064,1066,1067,1069,1070,1072,1073,1075,1076,1078,1079,1081,1082,1084,1085,1087,1088,1090,1091,1093,1094,1096,1097,1099,1100,1102,1103,1105,1106,1108,1109,1111,1112,1114,1115,1117,1118,1120,1121,1123,1124,1126,1127,1129,1130,1132,1133,1135,1136,1138,1139,1141,1142,1144,1145,1147,1148,1150,1151,1153,1154,1156,1157,1159,1160,1162,1163,1165,1166,1168,1169,1171,1172,1174,1175,1177,1178,1180,1181,1183,1184,1186,1187,1189,1190,1192,1193,1195,1196,1198,1199,1201,1202,1204,1205,1207,1208,1210,1211,1213,1214,1216,1217,1219,1220,1222,1223,1225,1226,1228,1229,1231,1232,1234,1235,1237,1238,1240,1241,1243,1244,1246,1247,1249,1250,1252,1253,1255,1256,1258,1259,1261,1262,1264,1265,1267,1268,1270,1271,1273,1274,1276,1277,1279,1280) have mixed types. Specify dtype option on import or set low_memory=False.\n", |
||
| 1094 | " interactivity=interactivity, compiler=compiler, result=result)\n" |
||
| 1095 | ] |
||
| 1096 | }, |
||
| 1097 | { |
||
| 1098 | "name": "stdout", |
||
| 1099 | "output_type": "stream", |
||
| 1100 | "text": [ |
||
| 1101 | "BLCA (20531, 427)\n" |
||
| 1102 | ] |
||
| 1103 | } |
||
| 1104 | ], |
||
| 1105 | "source": [ |
||
| 1106 | "f_ext = \".rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.data.txt\"\n", |
||
| 1107 | "for fpath in os.listdir(tcga_tmp_dir):\n", |
||
| 1108 | " if fpath.startswith(\"gdac.broadinstitute.org\") and not fpath.endswith(\".tar.gz\") :\n", |
||
| 1109 | " cohort = fpath.split(\"_\")[1].replace(\".Merge\",\"\")\n", |
||
| 1110 | " #print(fpath, cohort)\n", |
||
| 1111 | " fname = cohort + f_ext\n", |
||
| 1112 | " try:\n", |
||
| 1113 | " exprs = pd.read_csv(tcga_tmp_dir+\"/\"+fpath+\"/\"+fname,sep=\"\\t\",index_col=0)\n", |
||
| 1114 | " # drop \"gene_id\" and keep only \"scaled_estimate\" columns\n", |
||
| 1115 | " exprs = exprs.loc[:,exprs.T.loc[exprs.T[\"gene_id\"]==\"scaled_estimate\",:].index]\n", |
||
| 1116 | " exprs = exprs.iloc[1:,]\n", |
||
| 1117 | " exprs.rename(index = lambda x : int(x.split(\"|\")[1]),\n", |
||
| 1118 | " columns = lambda x : x.replace(\".1\",\"\"),inplace = True)\n", |
||
| 1119 | " exprs.index.name = \"ENTREZID\"\n", |
||
| 1120 | " # convert scaled_extimates to log2(TPM+1)\n", |
||
| 1121 | " exprs = exprs.applymap(lambda x : np.log2(float(x)*1000000+1))\n", |
||
| 1122 | " exprs = exprs.sort_index()\n", |
||
| 1123 | " exprs.to_csv(preprocessed_data_dir +\"TCGA-\"+cohort+\"_exprs.RSEMscaled_est2TPMplus1log2.tsv\",sep =\"\\t\")\n", |
||
| 1124 | " print(cohort,exprs.shape)\n", |
||
| 1125 | " except:\n", |
||
| 1126 | " print(cohort,\"No expression data.\")\n", |
||
| 1127 | "\n", |
||
| 1128 | "\n", |
||
| 1129 | " " |
||
| 1130 | ] |
||
| 1131 | }, |
||
| 1132 | { |
||
| 1133 | "cell_type": "code", |
||
| 1134 | "execution_count": 14, |
||
| 1135 | "metadata": {}, |
||
| 1136 | "outputs": [ |
||
| 1137 | { |
||
| 1138 | "data": { |
||
| 1139 | "text/html": [ |
||
| 1140 | "<div>\n", |
||
| 1141 | "<style scoped>\n", |
||
| 1142 | " .dataframe tbody tr th:only-of-type {\n", |
||
| 1143 | " vertical-align: middle;\n", |
||
| 1144 | " }\n", |
||
| 1145 | "\n", |
||
| 1146 | " .dataframe tbody tr th {\n", |
||
| 1147 | " vertical-align: top;\n", |
||
| 1148 | " }\n", |
||
| 1149 | "\n", |
||
| 1150 | " .dataframe thead th {\n", |
||
| 1151 | " text-align: right;\n", |
||
| 1152 | " }\n", |
||
| 1153 | "</style>\n", |
||
| 1154 | "<table border=\"1\" class=\"dataframe\">\n", |
||
| 1155 | " <thead>\n", |
||
| 1156 | " <tr style=\"text-align: right;\">\n", |
||
| 1157 | " <th></th>\n", |
||
| 1158 | " <th>TCGA-2F-A9KO-01A-11R-A38B-07</th>\n", |
||
| 1159 | " <th>TCGA-2F-A9KP-01A-11R-A38B-07</th>\n", |
||
| 1160 | " <th>TCGA-2F-A9KQ-01A-11R-A38B-07</th>\n", |
||
| 1161 | " <th>TCGA-2F-A9KR-01A-11R-A38B-07</th>\n", |
||
| 1162 | " <th>TCGA-2F-A9KT-01A-11R-A38B-07</th>\n", |
||
| 1163 | " <th>TCGA-2F-A9KW-01A-11R-A38B-07</th>\n", |
||
| 1164 | " <th>TCGA-4Z-AA7M-01A-11R-A39I-07</th>\n", |
||
| 1165 | " <th>TCGA-4Z-AA7N-01A-11R-A39I-07</th>\n", |
||
| 1166 | " <th>TCGA-4Z-AA7O-01A-31R-A39I-07</th>\n", |
||
| 1167 | " <th>TCGA-4Z-AA7Q-01A-11R-A39I-07</th>\n", |
||
| 1168 | " <th>...</th>\n", |
||
| 1169 | " <th>TCGA-ZF-AA4X-01A-11R-A38B-07</th>\n", |
||
| 1170 | " <th>TCGA-ZF-AA51-01A-21R-A39I-07</th>\n", |
||
| 1171 | " <th>TCGA-ZF-AA52-01A-12R-A39I-07</th>\n", |
||
| 1172 | " <th>TCGA-ZF-AA53-01A-11R-A39I-07</th>\n", |
||
| 1173 | " <th>TCGA-ZF-AA54-01A-11R-A39I-07</th>\n", |
||
| 1174 | " <th>TCGA-ZF-AA56-01A-31R-A39I-07</th>\n", |
||
| 1175 | " <th>TCGA-ZF-AA58-01A-12R-A42T-07</th>\n", |
||
| 1176 | " <th>TCGA-ZF-AA5H-01A-11R-A39I-07</th>\n", |
||
| 1177 | " <th>TCGA-ZF-AA5N-01A-11R-A42T-07</th>\n", |
||
| 1178 | " <th>TCGA-ZF-AA5P-01A-11R-A39I-07</th>\n", |
||
| 1179 | " </tr>\n", |
||
| 1180 | " <tr>\n", |
||
| 1181 | " <th>ENTREZID</th>\n", |
||
| 1182 | " <th></th>\n", |
||
| 1183 | " <th></th>\n", |
||
| 1184 | " <th></th>\n", |
||
| 1185 | " <th></th>\n", |
||
| 1186 | " <th></th>\n", |
||
| 1187 | " <th></th>\n", |
||
| 1188 | " <th></th>\n", |
||
| 1189 | " <th></th>\n", |
||
| 1190 | " <th></th>\n", |
||
| 1191 | " <th></th>\n", |
||
| 1192 | " <th></th>\n", |
||
| 1193 | " <th></th>\n", |
||
| 1194 | " <th></th>\n", |
||
| 1195 | " <th></th>\n", |
||
| 1196 | " <th></th>\n", |
||
| 1197 | " <th></th>\n", |
||
| 1198 | " <th></th>\n", |
||
| 1199 | " <th></th>\n", |
||
| 1200 | " <th></th>\n", |
||
| 1201 | " <th></th>\n", |
||
| 1202 | " <th></th>\n", |
||
| 1203 | " </tr>\n", |
||
| 1204 | " </thead>\n", |
||
| 1205 | " <tbody>\n", |
||
| 1206 | " <tr>\n", |
||
| 1207 | " <th>1</th>\n", |
||
| 1208 | " <td>1.161494</td>\n", |
||
| 1209 | " <td>0.622532</td>\n", |
||
| 1210 | " <td>0.837536</td>\n", |
||
| 1211 | " <td>1.063692</td>\n", |
||
| 1212 | " <td>0.732667</td>\n", |
||
| 1213 | " <td>0.912991</td>\n", |
||
| 1214 | " <td>1.612974</td>\n", |
||
| 1215 | " <td>2.076237</td>\n", |
||
| 1216 | " <td>0.870337</td>\n", |
||
| 1217 | " <td>2.222218</td>\n", |
||
| 1218 | " <td>...</td>\n", |
||
| 1219 | " <td>1.523498</td>\n", |
||
| 1220 | " <td>1.944983</td>\n", |
||
| 1221 | " <td>2.372653</td>\n", |
||
| 1222 | " <td>3.792826</td>\n", |
||
| 1223 | " <td>3.479011</td>\n", |
||
| 1224 | " <td>1.405645</td>\n", |
||
| 1225 | " <td>1.572033</td>\n", |
||
| 1226 | " <td>0.802134</td>\n", |
||
| 1227 | " <td>0.420320</td>\n", |
||
| 1228 | " <td>1.271811</td>\n", |
||
| 1229 | " </tr>\n", |
||
| 1230 | " <tr>\n", |
||
| 1231 | " <th>2</th>\n", |
||
| 1232 | " <td>8.034762</td>\n", |
||
| 1233 | " <td>7.703466</td>\n", |
||
| 1234 | " <td>7.782663</td>\n", |
||
| 1235 | " <td>6.971443</td>\n", |
||
| 1236 | " <td>6.047535</td>\n", |
||
| 1237 | " <td>8.625286</td>\n", |
||
| 1238 | " <td>6.235450</td>\n", |
||
| 1239 | " <td>9.710621</td>\n", |
||
| 1240 | " <td>7.270054</td>\n", |
||
| 1241 | " <td>7.775153</td>\n", |
||
| 1242 | " <td>...</td>\n", |
||
| 1243 | " <td>5.611083</td>\n", |
||
| 1244 | " <td>8.084193</td>\n", |
||
| 1245 | " <td>10.095678</td>\n", |
||
| 1246 | " <td>7.316936</td>\n", |
||
| 1247 | " <td>8.761957</td>\n", |
||
| 1248 | " <td>8.294718</td>\n", |
||
| 1249 | " <td>7.737907</td>\n", |
||
| 1250 | " <td>7.179355</td>\n", |
||
| 1251 | " <td>4.904007</td>\n", |
||
| 1252 | " <td>11.189585</td>\n", |
||
| 1253 | " </tr>\n", |
||
| 1254 | " <tr>\n", |
||
| 1255 | " <th>9</th>\n", |
||
| 1256 | " <td>2.167711</td>\n", |
||
| 1257 | " <td>2.047625</td>\n", |
||
| 1258 | " <td>2.951153</td>\n", |
||
| 1259 | " <td>1.890493</td>\n", |
||
| 1260 | " <td>1.988667</td>\n", |
||
| 1261 | " <td>2.454169</td>\n", |
||
| 1262 | " <td>2.643622</td>\n", |
||
| 1263 | " <td>3.141316</td>\n", |
||
| 1264 | " <td>2.077357</td>\n", |
||
| 1265 | " <td>1.675782</td>\n", |
||
| 1266 | " <td>...</td>\n", |
||
| 1267 | " <td>3.949491</td>\n", |
||
| 1268 | " <td>1.548279</td>\n", |
||
| 1269 | " <td>3.722545</td>\n", |
||
| 1270 | " <td>1.132057</td>\n", |
||
| 1271 | " <td>2.568140</td>\n", |
||
| 1272 | " <td>2.522893</td>\n", |
||
| 1273 | " <td>1.725319</td>\n", |
||
| 1274 | " <td>1.461496</td>\n", |
||
| 1275 | " <td>1.847315</td>\n", |
||
| 1276 | " <td>2.535479</td>\n", |
||
| 1277 | " </tr>\n", |
||
| 1278 | " <tr>\n", |
||
| 1279 | " <th>10</th>\n", |
||
| 1280 | " <td>0.000000</td>\n", |
||
| 1281 | " <td>0.117556</td>\n", |
||
| 1282 | " <td>0.000000</td>\n", |
||
| 1283 | " <td>0.289701</td>\n", |
||
| 1284 | " <td>0.000000</td>\n", |
||
| 1285 | " <td>0.000000</td>\n", |
||
| 1286 | " <td>0.000000</td>\n", |
||
| 1287 | " <td>0.380386</td>\n", |
||
| 1288 | " <td>0.056320</td>\n", |
||
| 1289 | " <td>0.637087</td>\n", |
||
| 1290 | " <td>...</td>\n", |
||
| 1291 | " <td>0.505300</td>\n", |
||
| 1292 | " <td>0.000000</td>\n", |
||
| 1293 | " <td>0.138816</td>\n", |
||
| 1294 | " <td>0.048032</td>\n", |
||
| 1295 | " <td>0.048921</td>\n", |
||
| 1296 | " <td>0.229931</td>\n", |
||
| 1297 | " <td>0.000000</td>\n", |
||
| 1298 | " <td>0.029659</td>\n", |
||
| 1299 | " <td>0.000000</td>\n", |
||
| 1300 | " <td>0.285390</td>\n", |
||
| 1301 | " </tr>\n", |
||
| 1302 | " <tr>\n", |
||
| 1303 | " <th>12</th>\n", |
||
| 1304 | " <td>2.467830</td>\n", |
||
| 1305 | " <td>2.420112</td>\n", |
||
| 1306 | " <td>0.644298</td>\n", |
||
| 1307 | " <td>4.545485</td>\n", |
||
| 1308 | " <td>0.052373</td>\n", |
||
| 1309 | " <td>1.322490</td>\n", |
||
| 1310 | " <td>0.434296</td>\n", |
||
| 1311 | " <td>4.842291</td>\n", |
||
| 1312 | " <td>0.000000</td>\n", |
||
| 1313 | " <td>0.817122</td>\n", |
||
| 1314 | " <td>...</td>\n", |
||
| 1315 | " <td>0.551129</td>\n", |
||
| 1316 | " <td>1.555709</td>\n", |
||
| 1317 | " <td>3.774938</td>\n", |
||
| 1318 | " <td>0.661099</td>\n", |
||
| 1319 | " <td>3.624965</td>\n", |
||
| 1320 | " <td>4.513976</td>\n", |
||
| 1321 | " <td>4.705967</td>\n", |
||
| 1322 | " <td>1.681905</td>\n", |
||
| 1323 | " <td>3.356545</td>\n", |
||
| 1324 | " <td>7.470335</td>\n", |
||
| 1325 | " </tr>\n", |
||
| 1326 | " <tr>\n", |
||
| 1327 | " <th>13</th>\n", |
||
| 1328 | " <td>1.607347</td>\n", |
||
| 1329 | " <td>0.666421</td>\n", |
||
| 1330 | " <td>2.125684</td>\n", |
||
| 1331 | " <td>3.496252</td>\n", |
||
| 1332 | " <td>0.287708</td>\n", |
||
| 1333 | " <td>0.288064</td>\n", |
||
| 1334 | " <td>0.244637</td>\n", |
||
| 1335 | " <td>0.067852</td>\n", |
||
| 1336 | " <td>7.387370</td>\n", |
||
| 1337 | " <td>0.506860</td>\n", |
||
| 1338 | " <td>...</td>\n", |
||
| 1339 | " <td>1.877776</td>\n", |
||
| 1340 | " <td>0.696837</td>\n", |
||
| 1341 | " <td>0.000000</td>\n", |
||
| 1342 | " <td>0.000000</td>\n", |
||
| 1343 | " <td>0.186422</td>\n", |
||
| 1344 | " <td>1.209302</td>\n", |
||
| 1345 | " <td>0.000000</td>\n", |
||
| 1346 | " <td>0.000000</td>\n", |
||
| 1347 | " <td>0.000000</td>\n", |
||
| 1348 | " <td>2.687331</td>\n", |
||
| 1349 | " </tr>\n", |
||
| 1350 | " <tr>\n", |
||
| 1351 | " <th>14</th>\n", |
||
| 1352 | " <td>6.712206</td>\n", |
||
| 1353 | " <td>6.844482</td>\n", |
||
| 1354 | " <td>6.394740</td>\n", |
||
| 1355 | " <td>7.557387</td>\n", |
||
| 1356 | " <td>6.178432</td>\n", |
||
| 1357 | " <td>6.353666</td>\n", |
||
| 1358 | " <td>6.690444</td>\n", |
||
| 1359 | " <td>6.741365</td>\n", |
||
| 1360 | " <td>7.059396</td>\n", |
||
| 1361 | " <td>6.466467</td>\n", |
||
| 1362 | " <td>...</td>\n", |
||
| 1363 | " <td>6.842549</td>\n", |
||
| 1364 | " <td>7.154221</td>\n", |
||
| 1365 | " <td>6.930621</td>\n", |
||
| 1366 | " <td>6.004271</td>\n", |
||
| 1367 | " <td>7.079890</td>\n", |
||
| 1368 | " <td>7.159629</td>\n", |
||
| 1369 | " <td>7.005162</td>\n", |
||
| 1370 | " <td>6.691151</td>\n", |
||
| 1371 | " <td>7.000661</td>\n", |
||
| 1372 | " <td>6.747745</td>\n", |
||
| 1373 | " </tr>\n", |
||
| 1374 | " <tr>\n", |
||
| 1375 | " <th>15</th>\n", |
||
| 1376 | " <td>0.080575</td>\n", |
||
| 1377 | " <td>0.000000</td>\n", |
||
| 1378 | " <td>0.211327</td>\n", |
||
| 1379 | " <td>0.178252</td>\n", |
||
| 1380 | " <td>0.086826</td>\n", |
||
| 1381 | " <td>0.000000</td>\n", |
||
| 1382 | " <td>0.085150</td>\n", |
||
| 1383 | " <td>0.130796</td>\n", |
||
| 1384 | " <td>0.000000</td>\n", |
||
| 1385 | " <td>0.478062</td>\n", |
||
| 1386 | " <td>...</td>\n", |
||
| 1387 | " <td>0.000000</td>\n", |
||
| 1388 | " <td>0.000000</td>\n", |
||
| 1389 | " <td>0.000000</td>\n", |
||
| 1390 | " <td>0.000000</td>\n", |
||
| 1391 | " <td>0.147725</td>\n", |
||
| 1392 | " <td>0.000000</td>\n", |
||
| 1393 | " <td>0.221314</td>\n", |
||
| 1394 | " <td>0.091143</td>\n", |
||
| 1395 | " <td>0.000000</td>\n", |
||
| 1396 | " <td>0.174953</td>\n", |
||
| 1397 | " </tr>\n", |
||
| 1398 | " <tr>\n", |
||
| 1399 | " <th>16</th>\n", |
||
| 1400 | " <td>6.763091</td>\n", |
||
| 1401 | " <td>6.625150</td>\n", |
||
| 1402 | " <td>6.082827</td>\n", |
||
| 1403 | " <td>5.402623</td>\n", |
||
| 1404 | " <td>5.592732</td>\n", |
||
| 1405 | " <td>7.433563</td>\n", |
||
| 1406 | " <td>5.714908</td>\n", |
||
| 1407 | " <td>5.731613</td>\n", |
||
| 1408 | " <td>5.883047</td>\n", |
||
| 1409 | " <td>5.032016</td>\n", |
||
| 1410 | " <td>...</td>\n", |
||
| 1411 | " <td>5.766447</td>\n", |
||
| 1412 | " <td>4.790307</td>\n", |
||
| 1413 | " <td>5.707889</td>\n", |
||
| 1414 | " <td>7.424335</td>\n", |
||
| 1415 | " <td>8.709575</td>\n", |
||
| 1416 | " <td>6.086463</td>\n", |
||
| 1417 | " <td>6.234755</td>\n", |
||
| 1418 | " <td>6.877003</td>\n", |
||
| 1419 | " <td>5.877546</td>\n", |
||
| 1420 | " <td>5.983488</td>\n", |
||
| 1421 | " </tr>\n", |
||
| 1422 | " <tr>\n", |
||
| 1423 | " <th>18</th>\n", |
||
| 1424 | " <td>3.988948</td>\n", |
||
| 1425 | " <td>4.263293</td>\n", |
||
| 1426 | " <td>4.377654</td>\n", |
||
| 1427 | " <td>2.923749</td>\n", |
||
| 1428 | " <td>4.049974</td>\n", |
||
| 1429 | " <td>1.382311</td>\n", |
||
| 1430 | " <td>4.889327</td>\n", |
||
| 1431 | " <td>3.960333</td>\n", |
||
| 1432 | " <td>4.559524</td>\n", |
||
| 1433 | " <td>0.999417</td>\n", |
||
| 1434 | " <td>...</td>\n", |
||
| 1435 | " <td>2.835719</td>\n", |
||
| 1436 | " <td>1.746883</td>\n", |
||
| 1437 | " <td>2.499375</td>\n", |
||
| 1438 | " <td>0.784887</td>\n", |
||
| 1439 | " <td>1.138534</td>\n", |
||
| 1440 | " <td>3.009449</td>\n", |
||
| 1441 | " <td>1.090132</td>\n", |
||
| 1442 | " <td>0.552370</td>\n", |
||
| 1443 | " <td>2.801317</td>\n", |
||
| 1444 | " <td>1.614018</td>\n", |
||
| 1445 | " </tr>\n", |
||
| 1446 | " <tr>\n", |
||
| 1447 | " <th>19</th>\n", |
||
| 1448 | " <td>2.616904</td>\n", |
||
| 1449 | " <td>1.357553</td>\n", |
||
| 1450 | " <td>2.887098</td>\n", |
||
| 1451 | " <td>2.551879</td>\n", |
||
| 1452 | " <td>3.340053</td>\n", |
||
| 1453 | " <td>4.326013</td>\n", |
||
| 1454 | " <td>3.255879</td>\n", |
||
| 1455 | " <td>3.513993</td>\n", |
||
| 1456 | " <td>1.193602</td>\n", |
||
| 1457 | " <td>3.132178</td>\n", |
||
| 1458 | " <td>...</td>\n", |
||
| 1459 | " <td>2.267587</td>\n", |
||
| 1460 | " <td>2.991613</td>\n", |
||
| 1461 | " <td>2.091500</td>\n", |
||
| 1462 | " <td>3.461593</td>\n", |
||
| 1463 | " <td>4.309989</td>\n", |
||
| 1464 | " <td>3.239834</td>\n", |
||
| 1465 | " <td>2.865977</td>\n", |
||
| 1466 | " <td>3.039675</td>\n", |
||
| 1467 | " <td>4.248400</td>\n", |
||
| 1468 | " <td>2.405480</td>\n", |
||
| 1469 | " </tr>\n", |
||
| 1470 | " <tr>\n", |
||
| 1471 | " <th>20</th>\n", |
||
| 1472 | " <td>1.961844</td>\n", |
||
| 1473 | " <td>3.090204</td>\n", |
||
| 1474 | " <td>2.750104</td>\n", |
||
| 1475 | " <td>2.616212</td>\n", |
||
| 1476 | " <td>4.824872</td>\n", |
||
| 1477 | " <td>1.875221</td>\n", |
||
| 1478 | " <td>3.087467</td>\n", |
||
| 1479 | " <td>3.481200</td>\n", |
||
| 1480 | " <td>2.447453</td>\n", |
||
| 1481 | " <td>1.753626</td>\n", |
||
| 1482 | " <td>...</td>\n", |
||
| 1483 | " <td>3.753183</td>\n", |
||
| 1484 | " <td>3.149116</td>\n", |
||
| 1485 | " <td>3.950087</td>\n", |
||
| 1486 | " <td>1.512966</td>\n", |
||
| 1487 | " <td>3.063315</td>\n", |
||
| 1488 | " <td>2.664546</td>\n", |
||
| 1489 | " <td>2.239061</td>\n", |
||
| 1490 | " <td>2.201044</td>\n", |
||
| 1491 | " <td>4.033922</td>\n", |
||
| 1492 | " <td>2.951935</td>\n", |
||
| 1493 | " </tr>\n", |
||
| 1494 | " <tr>\n", |
||
| 1495 | " <th>21</th>\n", |
||
| 1496 | " <td>0.612701</td>\n", |
||
| 1497 | " <td>2.171850</td>\n", |
||
| 1498 | " <td>1.529668</td>\n", |
||
| 1499 | " <td>0.874337</td>\n", |
||
| 1500 | " <td>0.658170</td>\n", |
||
| 1501 | " <td>3.151741</td>\n", |
||
| 1502 | " <td>1.052042</td>\n", |
||
| 1503 | " <td>2.201756</td>\n", |
||
| 1504 | " <td>0.261264</td>\n", |
||
| 1505 | " <td>1.009647</td>\n", |
||
| 1506 | " <td>...</td>\n", |
||
| 1507 | " <td>3.021527</td>\n", |
||
| 1508 | " <td>1.113386</td>\n", |
||
| 1509 | " <td>2.348143</td>\n", |
||
| 1510 | " <td>0.415792</td>\n", |
||
| 1511 | " <td>1.146891</td>\n", |
||
| 1512 | " <td>0.973392</td>\n", |
||
| 1513 | " <td>1.574075</td>\n", |
||
| 1514 | " <td>0.609913</td>\n", |
||
| 1515 | " <td>0.356479</td>\n", |
||
| 1516 | " <td>3.029807</td>\n", |
||
| 1517 | " </tr>\n", |
||
| 1518 | " <tr>\n", |
||
| 1519 | " <th>22</th>\n", |
||
| 1520 | " <td>3.963608</td>\n", |
||
| 1521 | " <td>3.558606</td>\n", |
||
| 1522 | " <td>3.232821</td>\n", |
||
| 1523 | " <td>4.034338</td>\n", |
||
| 1524 | " <td>3.022397</td>\n", |
||
| 1525 | " <td>2.919716</td>\n", |
||
| 1526 | " <td>4.367590</td>\n", |
||
| 1527 | " <td>3.606886</td>\n", |
||
| 1528 | " <td>3.189884</td>\n", |
||
| 1529 | " <td>3.521772</td>\n", |
||
| 1530 | " <td>...</td>\n", |
||
| 1531 | " <td>4.114507</td>\n", |
||
| 1532 | " <td>3.389721</td>\n", |
||
| 1533 | " <td>3.120593</td>\n", |
||
| 1534 | " <td>3.509229</td>\n", |
||
| 1535 | " <td>3.879658</td>\n", |
||
| 1536 | " <td>3.396367</td>\n", |
||
| 1537 | " <td>4.009166</td>\n", |
||
| 1538 | " <td>3.136087</td>\n", |
||
| 1539 | " <td>2.831521</td>\n", |
||
| 1540 | " <td>3.356951</td>\n", |
||
| 1541 | " </tr>\n", |
||
| 1542 | " <tr>\n", |
||
| 1543 | " <th>23</th>\n", |
||
| 1544 | " <td>5.866598</td>\n", |
||
| 1545 | " <td>5.853114</td>\n", |
||
| 1546 | " <td>5.628400</td>\n", |
||
| 1547 | " <td>5.752864</td>\n", |
||
| 1548 | " <td>5.695003</td>\n", |
||
| 1549 | " <td>6.594964</td>\n", |
||
| 1550 | " <td>6.738333</td>\n", |
||
| 1551 | " <td>5.660017</td>\n", |
||
| 1552 | " <td>5.480534</td>\n", |
||
| 1553 | " <td>5.570752</td>\n", |
||
| 1554 | " <td>...</td>\n", |
||
| 1555 | " <td>6.430712</td>\n", |
||
| 1556 | " <td>5.604658</td>\n", |
||
| 1557 | " <td>5.590098</td>\n", |
||
| 1558 | " <td>5.312926</td>\n", |
||
| 1559 | " <td>6.285286</td>\n", |
||
| 1560 | " <td>6.186670</td>\n", |
||
| 1561 | " <td>6.549178</td>\n", |
||
| 1562 | " <td>6.333991</td>\n", |
||
| 1563 | " <td>5.442255</td>\n", |
||
| 1564 | " <td>6.053878</td>\n", |
||
| 1565 | " </tr>\n", |
||
| 1566 | " <tr>\n", |
||
| 1567 | " <th>24</th>\n", |
||
| 1568 | " <td>1.926233</td>\n", |
||
| 1569 | " <td>0.045424</td>\n", |
||
| 1570 | " <td>0.055199</td>\n", |
||
| 1571 | " <td>0.088273</td>\n", |
||
| 1572 | " <td>0.064751</td>\n", |
||
| 1573 | " <td>1.128087</td>\n", |
||
| 1574 | " <td>0.803342</td>\n", |
||
| 1575 | " <td>0.963160</td>\n", |
||
| 1576 | " <td>0.533395</td>\n", |
||
| 1577 | " <td>0.066792</td>\n", |
||
| 1578 | " <td>...</td>\n", |
||
| 1579 | " <td>1.379999</td>\n", |
||
| 1580 | " <td>0.300011</td>\n", |
||
| 1581 | " <td>0.421376</td>\n", |
||
| 1582 | " <td>1.882620</td>\n", |
||
| 1583 | " <td>0.130356</td>\n", |
||
| 1584 | " <td>2.567049</td>\n", |
||
| 1585 | " <td>2.568703</td>\n", |
||
| 1586 | " <td>0.173096</td>\n", |
||
| 1587 | " <td>0.388828</td>\n", |
||
| 1588 | " <td>0.104554</td>\n", |
||
| 1589 | " </tr>\n", |
||
| 1590 | " <tr>\n", |
||
| 1591 | " <th>25</th>\n", |
||
| 1592 | " <td>4.220049</td>\n", |
||
| 1593 | " <td>4.463162</td>\n", |
||
| 1594 | " <td>3.714227</td>\n", |
||
| 1595 | " <td>4.611958</td>\n", |
||
| 1596 | " <td>4.654495</td>\n", |
||
| 1597 | " <td>4.446463</td>\n", |
||
| 1598 | " <td>4.265416</td>\n", |
||
| 1599 | " <td>5.059879</td>\n", |
||
| 1600 | " <td>3.456701</td>\n", |
||
| 1601 | " <td>3.441491</td>\n", |
||
| 1602 | " <td>...</td>\n", |
||
| 1603 | " <td>4.609126</td>\n", |
||
| 1604 | " <td>3.930508</td>\n", |
||
| 1605 | " <td>4.711956</td>\n", |
||
| 1606 | " <td>4.138851</td>\n", |
||
| 1607 | " <td>4.864261</td>\n", |
||
| 1608 | " <td>4.814331</td>\n", |
||
| 1609 | " <td>4.535544</td>\n", |
||
| 1610 | " <td>4.680990</td>\n", |
||
| 1611 | " <td>3.357347</td>\n", |
||
| 1612 | " <td>5.748911</td>\n", |
||
| 1613 | " </tr>\n", |
||
| 1614 | " <tr>\n", |
||
| 1615 | " <th>26</th>\n", |
||
| 1616 | " <td>1.534503</td>\n", |
||
| 1617 | " <td>0.457208</td>\n", |
||
| 1618 | " <td>1.656747</td>\n", |
||
| 1619 | " <td>3.666896</td>\n", |
||
| 1620 | " <td>0.465448</td>\n", |
||
| 1621 | " <td>0.336673</td>\n", |
||
| 1622 | " <td>0.304059</td>\n", |
||
| 1623 | " <td>0.574648</td>\n", |
||
| 1624 | " <td>0.489768</td>\n", |
||
| 1625 | " <td>0.309481</td>\n", |
||
| 1626 | " <td>...</td>\n", |
||
| 1627 | " <td>1.756336</td>\n", |
||
| 1628 | " <td>0.761530</td>\n", |
||
| 1629 | " <td>0.596701</td>\n", |
||
| 1630 | " <td>1.438399</td>\n", |
||
| 1631 | " <td>0.121543</td>\n", |
||
| 1632 | " <td>1.735965</td>\n", |
||
| 1633 | " <td>0.430035</td>\n", |
||
| 1634 | " <td>0.857632</td>\n", |
||
| 1635 | " <td>0.090871</td>\n", |
||
| 1636 | " <td>0.192650</td>\n", |
||
| 1637 | " </tr>\n", |
||
| 1638 | " <tr>\n", |
||
| 1639 | " <th>27</th>\n", |
||
| 1640 | " <td>3.009672</td>\n", |
||
| 1641 | " <td>2.538702</td>\n", |
||
| 1642 | " <td>2.058677</td>\n", |
||
| 1643 | " <td>2.333097</td>\n", |
||
| 1644 | " <td>2.186895</td>\n", |
||
| 1645 | " <td>3.246505</td>\n", |
||
| 1646 | " <td>2.840525</td>\n", |
||
| 1647 | " <td>3.008115</td>\n", |
||
| 1648 | " <td>1.988889</td>\n", |
||
| 1649 | " <td>1.045557</td>\n", |
||
| 1650 | " <td>...</td>\n", |
||
| 1651 | " <td>2.060089</td>\n", |
||
| 1652 | " <td>1.888903</td>\n", |
||
| 1653 | " <td>1.985187</td>\n", |
||
| 1654 | " <td>2.370396</td>\n", |
||
| 1655 | " <td>3.736276</td>\n", |
||
| 1656 | " <td>1.990344</td>\n", |
||
| 1657 | " <td>3.346693</td>\n", |
||
| 1658 | " <td>4.048708</td>\n", |
||
| 1659 | " <td>1.476133</td>\n", |
||
| 1660 | " <td>2.492175</td>\n", |
||
| 1661 | " </tr>\n", |
||
| 1662 | " <tr>\n", |
||
| 1663 | " <th>28</th>\n", |
||
| 1664 | " <td>3.553466</td>\n", |
||
| 1665 | " <td>0.071613</td>\n", |
||
| 1666 | " <td>4.043810</td>\n", |
||
| 1667 | " <td>1.998537</td>\n", |
||
| 1668 | " <td>3.651975</td>\n", |
||
| 1669 | " <td>0.970909</td>\n", |
||
| 1670 | " <td>0.049227</td>\n", |
||
| 1671 | " <td>2.933275</td>\n", |
||
| 1672 | " <td>0.000000</td>\n", |
||
| 1673 | " <td>4.048759</td>\n", |
||
| 1674 | " <td>...</td>\n", |
||
| 1675 | " <td>2.940057</td>\n", |
||
| 1676 | " <td>0.047274</td>\n", |
||
| 1677 | " <td>0.277321</td>\n", |
||
| 1678 | " <td>0.241962</td>\n", |
||
| 1679 | " <td>0.000000</td>\n", |
||
| 1680 | " <td>2.330907</td>\n", |
||
| 1681 | " <td>0.033785</td>\n", |
||
| 1682 | " <td>0.052927</td>\n", |
||
| 1683 | " <td>0.293858</td>\n", |
||
| 1684 | " <td>0.617408</td>\n", |
||
| 1685 | " </tr>\n", |
||
| 1686 | " <tr>\n", |
||
| 1687 | " <th>29</th>\n", |
||
| 1688 | " <td>4.252114</td>\n", |
||
| 1689 | " <td>5.314371</td>\n", |
||
| 1690 | " <td>4.405773</td>\n", |
||
| 1691 | " <td>4.809010</td>\n", |
||
| 1692 | " <td>4.823228</td>\n", |
||
| 1693 | " <td>3.875454</td>\n", |
||
| 1694 | " <td>4.548557</td>\n", |
||
| 1695 | " <td>5.491118</td>\n", |
||
| 1696 | " <td>4.567789</td>\n", |
||
| 1697 | " <td>5.541956</td>\n", |
||
| 1698 | " <td>...</td>\n", |
||
| 1699 | " <td>6.306159</td>\n", |
||
| 1700 | " <td>5.983578</td>\n", |
||
| 1701 | " <td>4.841091</td>\n", |
||
| 1702 | " <td>3.985534</td>\n", |
||
| 1703 | " <td>5.395005</td>\n", |
||
| 1704 | " <td>5.227438</td>\n", |
||
| 1705 | " <td>5.352269</td>\n", |
||
| 1706 | " <td>6.153357</td>\n", |
||
| 1707 | " <td>4.272364</td>\n", |
||
| 1708 | " <td>4.636339</td>\n", |
||
| 1709 | " </tr>\n", |
||
| 1710 | " <tr>\n", |
||
| 1711 | " <th>30</th>\n", |
||
| 1712 | " <td>6.283626</td>\n", |
||
| 1713 | " <td>7.041333</td>\n", |
||
| 1714 | " <td>6.944863</td>\n", |
||
| 1715 | " <td>6.671349</td>\n", |
||
| 1716 | " <td>6.951327</td>\n", |
||
| 1717 | " <td>5.968195</td>\n", |
||
| 1718 | " <td>6.568039</td>\n", |
||
| 1719 | " <td>6.418584</td>\n", |
||
| 1720 | " <td>6.085184</td>\n", |
||
| 1721 | " <td>5.676482</td>\n", |
||
| 1722 | " <td>...</td>\n", |
||
| 1723 | " <td>7.011171</td>\n", |
||
| 1724 | " <td>6.898103</td>\n", |
||
| 1725 | " <td>6.407046</td>\n", |
||
| 1726 | " <td>6.627765</td>\n", |
||
| 1727 | " <td>4.923261</td>\n", |
||
| 1728 | " <td>6.389457</td>\n", |
||
| 1729 | " <td>6.324138</td>\n", |
||
| 1730 | " <td>5.236563</td>\n", |
||
| 1731 | " <td>6.822422</td>\n", |
||
| 1732 | " <td>6.143988</td>\n", |
||
| 1733 | " </tr>\n", |
||
| 1734 | " <tr>\n", |
||
| 1735 | " <th>31</th>\n", |
||
| 1736 | " <td>4.650181</td>\n", |
||
| 1737 | " <td>4.974986</td>\n", |
||
| 1738 | " <td>4.473319</td>\n", |
||
| 1739 | " <td>5.608256</td>\n", |
||
| 1740 | " <td>5.003486</td>\n", |
||
| 1741 | " <td>4.237128</td>\n", |
||
| 1742 | " <td>4.899172</td>\n", |
||
| 1743 | " <td>4.801196</td>\n", |
||
| 1744 | " <td>4.411286</td>\n", |
||
| 1745 | " <td>4.604509</td>\n", |
||
| 1746 | " <td>...</td>\n", |
||
| 1747 | " <td>5.489832</td>\n", |
||
| 1748 | " <td>4.361208</td>\n", |
||
| 1749 | " <td>4.499776</td>\n", |
||
| 1750 | " <td>4.099796</td>\n", |
||
| 1751 | " <td>4.310456</td>\n", |
||
| 1752 | " <td>5.287507</td>\n", |
||
| 1753 | " <td>3.789480</td>\n", |
||
| 1754 | " <td>4.593572</td>\n", |
||
| 1755 | " <td>4.810476</td>\n", |
||
| 1756 | " <td>4.482980</td>\n", |
||
| 1757 | " </tr>\n", |
||
| 1758 | " <tr>\n", |
||
| 1759 | " <th>32</th>\n", |
||
| 1760 | " <td>1.287524</td>\n", |
||
| 1761 | " <td>0.505654</td>\n", |
||
| 1762 | " <td>0.763694</td>\n", |
||
| 1763 | " <td>1.874325</td>\n", |
||
| 1764 | " <td>0.733106</td>\n", |
||
| 1765 | " <td>0.757118</td>\n", |
||
| 1766 | " <td>1.871018</td>\n", |
||
| 1767 | " <td>2.696572</td>\n", |
||
| 1768 | " <td>0.690042</td>\n", |
||
| 1769 | " <td>2.033386</td>\n", |
||
| 1770 | " <td>...</td>\n", |
||
| 1771 | " <td>2.531524</td>\n", |
||
| 1772 | " <td>1.201789</td>\n", |
||
| 1773 | " <td>2.071635</td>\n", |
||
| 1774 | " <td>0.923636</td>\n", |
||
| 1775 | " <td>1.525026</td>\n", |
||
| 1776 | " <td>1.321938</td>\n", |
||
| 1777 | " <td>1.662648</td>\n", |
||
| 1778 | " <td>1.231275</td>\n", |
||
| 1779 | " <td>0.364992</td>\n", |
||
| 1780 | " <td>3.270376</td>\n", |
||
| 1781 | " </tr>\n", |
||
| 1782 | " <tr>\n", |
||
| 1783 | " <th>33</th>\n", |
||
| 1784 | " <td>0.407168</td>\n", |
||
| 1785 | " <td>0.272536</td>\n", |
||
| 1786 | " <td>0.191193</td>\n", |
||
| 1787 | " <td>0.570630</td>\n", |
||
| 1788 | " <td>0.159784</td>\n", |
||
| 1789 | " <td>0.000000</td>\n", |
||
| 1790 | " <td>0.401075</td>\n", |
||
| 1791 | " <td>0.162440</td>\n", |
||
| 1792 | " <td>0.000000</td>\n", |
||
| 1793 | " <td>0.365014</td>\n", |
||
| 1794 | " <td>...</td>\n", |
||
| 1795 | " <td>2.082781</td>\n", |
||
| 1796 | " <td>0.051872</td>\n", |
||
| 1797 | " <td>0.023798</td>\n", |
||
| 1798 | " <td>0.070492</td>\n", |
||
| 1799 | " <td>0.118533</td>\n", |
||
| 1800 | " <td>0.513203</td>\n", |
||
| 1801 | " <td>0.000000</td>\n", |
||
| 1802 | " <td>0.269587</td>\n", |
||
| 1803 | " <td>0.000000</td>\n", |
||
| 1804 | " <td>0.264252</td>\n", |
||
| 1805 | " </tr>\n", |
||
| 1806 | " <tr>\n", |
||
| 1807 | " <th>34</th>\n", |
||
| 1808 | " <td>4.699257</td>\n", |
||
| 1809 | " <td>5.466270</td>\n", |
||
| 1810 | " <td>5.665893</td>\n", |
||
| 1811 | " <td>5.476256</td>\n", |
||
| 1812 | " <td>3.955474</td>\n", |
||
| 1813 | " <td>4.042493</td>\n", |
||
| 1814 | " <td>5.060120</td>\n", |
||
| 1815 | " <td>5.352350</td>\n", |
||
| 1816 | " <td>4.347544</td>\n", |
||
| 1817 | " <td>4.789519</td>\n", |
||
| 1818 | " <td>...</td>\n", |
||
| 1819 | " <td>6.376422</td>\n", |
||
| 1820 | " <td>4.577791</td>\n", |
||
| 1821 | " <td>3.492034</td>\n", |
||
| 1822 | " <td>4.605242</td>\n", |
||
| 1823 | " <td>4.283358</td>\n", |
||
| 1824 | " <td>4.977100</td>\n", |
||
| 1825 | " <td>4.716416</td>\n", |
||
| 1826 | " <td>4.580350</td>\n", |
||
| 1827 | " <td>3.954026</td>\n", |
||
| 1828 | " <td>4.304655</td>\n", |
||
| 1829 | " </tr>\n", |
||
| 1830 | " <tr>\n", |
||
| 1831 | " <th>35</th>\n", |
||
| 1832 | " <td>4.221315</td>\n", |
||
| 1833 | " <td>4.060692</td>\n", |
||
| 1834 | " <td>5.565621</td>\n", |
||
| 1835 | " <td>4.414742</td>\n", |
||
| 1836 | " <td>4.286086</td>\n", |
||
| 1837 | " <td>4.366536</td>\n", |
||
| 1838 | " <td>4.255144</td>\n", |
||
| 1839 | " <td>3.561433</td>\n", |
||
| 1840 | " <td>3.889248</td>\n", |
||
| 1841 | " <td>4.366157</td>\n", |
||
| 1842 | " <td>...</td>\n", |
||
| 1843 | " <td>4.455009</td>\n", |
||
| 1844 | " <td>4.415570</td>\n", |
||
| 1845 | " <td>4.746772</td>\n", |
||
| 1846 | " <td>4.056638</td>\n", |
||
| 1847 | " <td>3.347017</td>\n", |
||
| 1848 | " <td>4.584887</td>\n", |
||
| 1849 | " <td>3.579932</td>\n", |
||
| 1850 | " <td>3.506765</td>\n", |
||
| 1851 | " <td>4.248824</td>\n", |
||
| 1852 | " <td>5.511854</td>\n", |
||
| 1853 | " </tr>\n", |
||
| 1854 | " <tr>\n", |
||
| 1855 | " <th>36</th>\n", |
||
| 1856 | " <td>2.546490</td>\n", |
||
| 1857 | " <td>4.141481</td>\n", |
||
| 1858 | " <td>4.002538</td>\n", |
||
| 1859 | " <td>2.430160</td>\n", |
||
| 1860 | " <td>2.272737</td>\n", |
||
| 1861 | " <td>2.416162</td>\n", |
||
| 1862 | " <td>3.025325</td>\n", |
||
| 1863 | " <td>3.605907</td>\n", |
||
| 1864 | " <td>3.095087</td>\n", |
||
| 1865 | " <td>1.872858</td>\n", |
||
| 1866 | " <td>...</td>\n", |
||
| 1867 | " <td>2.938874</td>\n", |
||
| 1868 | " <td>1.959830</td>\n", |
||
| 1869 | " <td>1.615353</td>\n", |
||
| 1870 | " <td>0.780055</td>\n", |
||
| 1871 | " <td>2.305503</td>\n", |
||
| 1872 | " <td>3.151896</td>\n", |
||
| 1873 | " <td>1.116940</td>\n", |
||
| 1874 | " <td>1.183204</td>\n", |
||
| 1875 | " <td>1.778956</td>\n", |
||
| 1876 | " <td>2.279470</td>\n", |
||
| 1877 | " </tr>\n", |
||
| 1878 | " <tr>\n", |
||
| 1879 | " <th>37</th>\n", |
||
| 1880 | " <td>8.221469</td>\n", |
||
| 1881 | " <td>8.484431</td>\n", |
||
| 1882 | " <td>8.220426</td>\n", |
||
| 1883 | " <td>7.658984</td>\n", |
||
| 1884 | " <td>7.298956</td>\n", |
||
| 1885 | " <td>7.522056</td>\n", |
||
| 1886 | " <td>7.826961</td>\n", |
||
| 1887 | " <td>7.369623</td>\n", |
||
| 1888 | " <td>8.441356</td>\n", |
||
| 1889 | " <td>7.439627</td>\n", |
||
| 1890 | " <td>...</td>\n", |
||
| 1891 | " <td>8.781912</td>\n", |
||
| 1892 | " <td>8.247836</td>\n", |
||
| 1893 | " <td>8.192882</td>\n", |
||
| 1894 | " <td>7.438942</td>\n", |
||
| 1895 | " <td>7.362950</td>\n", |
||
| 1896 | " <td>7.659910</td>\n", |
||
| 1897 | " <td>7.255310</td>\n", |
||
| 1898 | " <td>7.487467</td>\n", |
||
| 1899 | " <td>8.403723</td>\n", |
||
| 1900 | " <td>7.616378</td>\n", |
||
| 1901 | " </tr>\n", |
||
| 1902 | " <tr>\n", |
||
| 1903 | " <th>38</th>\n", |
||
| 1904 | " <td>4.277477</td>\n", |
||
| 1905 | " <td>4.804687</td>\n", |
||
| 1906 | " <td>4.168925</td>\n", |
||
| 1907 | " <td>2.910270</td>\n", |
||
| 1908 | " <td>3.432268</td>\n", |
||
| 1909 | " <td>4.960705</td>\n", |
||
| 1910 | " <td>4.294950</td>\n", |
||
| 1911 | " <td>4.475646</td>\n", |
||
| 1912 | " <td>2.691840</td>\n", |
||
| 1913 | " <td>3.959515</td>\n", |
||
| 1914 | " <td>...</td>\n", |
||
| 1915 | " <td>4.490428</td>\n", |
||
| 1916 | " <td>4.263302</td>\n", |
||
| 1917 | " <td>4.684854</td>\n", |
||
| 1918 | " <td>4.018424</td>\n", |
||
| 1919 | " <td>5.138271</td>\n", |
||
| 1920 | " <td>4.254429</td>\n", |
||
| 1921 | " <td>4.615857</td>\n", |
||
| 1922 | " <td>3.647883</td>\n", |
||
| 1923 | " <td>4.821318</td>\n", |
||
| 1924 | " <td>5.106815</td>\n", |
||
| 1925 | " </tr>\n", |
||
| 1926 | " <tr>\n", |
||
| 1927 | " <th>...</th>\n", |
||
| 1928 | " <td>...</td>\n", |
||
| 1929 | " <td>...</td>\n", |
||
| 1930 | " <td>...</td>\n", |
||
| 1931 | " <td>...</td>\n", |
||
| 1932 | " <td>...</td>\n", |
||
| 1933 | " <td>...</td>\n", |
||
| 1934 | " <td>...</td>\n", |
||
| 1935 | " <td>...</td>\n", |
||
| 1936 | " <td>...</td>\n", |
||
| 1937 | " <td>...</td>\n", |
||
| 1938 | " <td>...</td>\n", |
||
| 1939 | " <td>...</td>\n", |
||
| 1940 | " <td>...</td>\n", |
||
| 1941 | " <td>...</td>\n", |
||
| 1942 | " <td>...</td>\n", |
||
| 1943 | " <td>...</td>\n", |
||
| 1944 | " <td>...</td>\n", |
||
| 1945 | " <td>...</td>\n", |
||
| 1946 | " <td>...</td>\n", |
||
| 1947 | " <td>...</td>\n", |
||
| 1948 | " <td>...</td>\n", |
||
| 1949 | " </tr>\n", |
||
| 1950 | " <tr>\n", |
||
| 1951 | " <th>100271722</th>\n", |
||
| 1952 | " <td>1.381865</td>\n", |
||
| 1953 | " <td>0.559305</td>\n", |
||
| 1954 | " <td>2.507135</td>\n", |
||
| 1955 | " <td>2.419759</td>\n", |
||
| 1956 | " <td>2.330566</td>\n", |
||
| 1957 | " <td>0.527452</td>\n", |
||
| 1958 | " <td>1.290149</td>\n", |
||
| 1959 | " <td>1.200610</td>\n", |
||
| 1960 | " <td>1.584978</td>\n", |
||
| 1961 | " <td>0.413451</td>\n", |
||
| 1962 | " <td>...</td>\n", |
||
| 1963 | " <td>1.857436</td>\n", |
||
| 1964 | " <td>1.044742</td>\n", |
||
| 1965 | " <td>1.666201</td>\n", |
||
| 1966 | " <td>1.198038</td>\n", |
||
| 1967 | " <td>1.466321</td>\n", |
||
| 1968 | " <td>1.119355</td>\n", |
||
| 1969 | " <td>0.912242</td>\n", |
||
| 1970 | " <td>1.382247</td>\n", |
||
| 1971 | " <td>0.201691</td>\n", |
||
| 1972 | " <td>1.844866</td>\n", |
||
| 1973 | " </tr>\n", |
||
| 1974 | " <tr>\n", |
||
| 1975 | " <th>100271831</th>\n", |
||
| 1976 | " <td>2.886801</td>\n", |
||
| 1977 | " <td>1.372946</td>\n", |
||
| 1978 | " <td>3.480265</td>\n", |
||
| 1979 | " <td>3.585413</td>\n", |
||
| 1980 | " <td>3.752486</td>\n", |
||
| 1981 | " <td>2.600814</td>\n", |
||
| 1982 | " <td>1.559259</td>\n", |
||
| 1983 | " <td>2.873348</td>\n", |
||
| 1984 | " <td>3.187062</td>\n", |
||
| 1985 | " <td>2.483700</td>\n", |
||
| 1986 | " <td>...</td>\n", |
||
| 1987 | " <td>2.684300</td>\n", |
||
| 1988 | " <td>2.268963</td>\n", |
||
| 1989 | " <td>4.460098</td>\n", |
||
| 1990 | " <td>4.180091</td>\n", |
||
| 1991 | " <td>3.717881</td>\n", |
||
| 1992 | " <td>2.960833</td>\n", |
||
| 1993 | " <td>3.142854</td>\n", |
||
| 1994 | " <td>3.235265</td>\n", |
||
| 1995 | " <td>3.947347</td>\n", |
||
| 1996 | " <td>3.500957</td>\n", |
||
| 1997 | " </tr>\n", |
||
| 1998 | " <tr>\n", |
||
| 1999 | " <th>100271832</th>\n", |
||
| 2000 | " <td>0.000000</td>\n", |
||
| 2001 | " <td>0.037902</td>\n", |
||
| 2002 | " <td>0.000000</td>\n", |
||
| 2003 | " <td>0.000000</td>\n", |
||
| 2004 | " <td>0.000000</td>\n", |
||
| 2005 | " <td>0.000000</td>\n", |
||
| 2006 | " <td>0.101151</td>\n", |
||
| 2007 | " <td>0.000000</td>\n", |
||
| 2008 | " <td>0.000000</td>\n", |
||
| 2009 | " <td>0.073447</td>\n", |
||
| 2010 | " <td>...</td>\n", |
||
| 2011 | " <td>0.079084</td>\n", |
||
| 2012 | " <td>0.000000</td>\n", |
||
| 2013 | " <td>0.000000</td>\n", |
||
| 2014 | " <td>0.000000</td>\n", |
||
| 2015 | " <td>0.000000</td>\n", |
||
| 2016 | " <td>0.076156</td>\n", |
||
| 2017 | " <td>0.000000</td>\n", |
||
| 2018 | " <td>0.000000</td>\n", |
||
| 2019 | " <td>0.000000</td>\n", |
||
| 2020 | " <td>0.000000</td>\n", |
||
| 2021 | " </tr>\n", |
||
| 2022 | " <tr>\n", |
||
| 2023 | " <th>100271835</th>\n", |
||
| 2024 | " <td>1.174398</td>\n", |
||
| 2025 | " <td>0.086516</td>\n", |
||
| 2026 | " <td>0.439386</td>\n", |
||
| 2027 | " <td>0.387716</td>\n", |
||
| 2028 | " <td>0.366027</td>\n", |
||
| 2029 | " <td>1.112313</td>\n", |
||
| 2030 | " <td>2.189107</td>\n", |
||
| 2031 | " <td>1.305199</td>\n", |
||
| 2032 | " <td>0.767436</td>\n", |
||
| 2033 | " <td>0.521596</td>\n", |
||
| 2034 | " <td>...</td>\n", |
||
| 2035 | " <td>2.434429</td>\n", |
||
| 2036 | " <td>1.578586</td>\n", |
||
| 2037 | " <td>4.078831</td>\n", |
||
| 2038 | " <td>1.537604</td>\n", |
||
| 2039 | " <td>1.442136</td>\n", |
||
| 2040 | " <td>0.560257</td>\n", |
||
| 2041 | " <td>3.070388</td>\n", |
||
| 2042 | " <td>0.290139</td>\n", |
||
| 2043 | " <td>3.115400</td>\n", |
||
| 2044 | " <td>2.146352</td>\n", |
||
| 2045 | " </tr>\n", |
||
| 2046 | " <tr>\n", |
||
| 2047 | " <th>100271836</th>\n", |
||
| 2048 | " <td>4.184755</td>\n", |
||
| 2049 | " <td>3.800484</td>\n", |
||
| 2050 | " <td>2.966304</td>\n", |
||
| 2051 | " <td>3.708623</td>\n", |
||
| 2052 | " <td>3.345557</td>\n", |
||
| 2053 | " <td>2.628879</td>\n", |
||
| 2054 | " <td>3.731009</td>\n", |
||
| 2055 | " <td>3.673671</td>\n", |
||
| 2056 | " <td>2.879152</td>\n", |
||
| 2057 | " <td>1.792119</td>\n", |
||
| 2058 | " <td>...</td>\n", |
||
| 2059 | " <td>2.792174</td>\n", |
||
| 2060 | " <td>1.910625</td>\n", |
||
| 2061 | " <td>1.574269</td>\n", |
||
| 2062 | " <td>1.408949</td>\n", |
||
| 2063 | " <td>3.184371</td>\n", |
||
| 2064 | " <td>2.954052</td>\n", |
||
| 2065 | " <td>1.761250</td>\n", |
||
| 2066 | " <td>2.324886</td>\n", |
||
| 2067 | " <td>2.212781</td>\n", |
||
| 2068 | " <td>2.272575</td>\n", |
||
| 2069 | " </tr>\n", |
||
| 2070 | " <tr>\n", |
||
| 2071 | " <th>100271849</th>\n", |
||
| 2072 | " <td>1.324908</td>\n", |
||
| 2073 | " <td>1.796684</td>\n", |
||
| 2074 | " <td>0.396215</td>\n", |
||
| 2075 | " <td>2.046291</td>\n", |
||
| 2076 | " <td>1.285535</td>\n", |
||
| 2077 | " <td>1.621034</td>\n", |
||
| 2078 | " <td>0.498564</td>\n", |
||
| 2079 | " <td>4.324096</td>\n", |
||
| 2080 | " <td>1.400875</td>\n", |
||
| 2081 | " <td>2.327593</td>\n", |
||
| 2082 | " <td>...</td>\n", |
||
| 2083 | " <td>2.146905</td>\n", |
||
| 2084 | " <td>2.099291</td>\n", |
||
| 2085 | " <td>1.335053</td>\n", |
||
| 2086 | " <td>1.070452</td>\n", |
||
| 2087 | " <td>2.811217</td>\n", |
||
| 2088 | " <td>1.928666</td>\n", |
||
| 2089 | " <td>1.942872</td>\n", |
||
| 2090 | " <td>1.679722</td>\n", |
||
| 2091 | " <td>0.763542</td>\n", |
||
| 2092 | " <td>2.142223</td>\n", |
||
| 2093 | " </tr>\n", |
||
| 2094 | " <tr>\n", |
||
| 2095 | " <th>100272146</th>\n", |
||
| 2096 | " <td>1.431248</td>\n", |
||
| 2097 | " <td>1.258686</td>\n", |
||
| 2098 | " <td>1.048321</td>\n", |
||
| 2099 | " <td>1.689908</td>\n", |
||
| 2100 | " <td>1.149648</td>\n", |
||
| 2101 | " <td>0.882753</td>\n", |
||
| 2102 | " <td>1.773980</td>\n", |
||
| 2103 | " <td>1.153539</td>\n", |
||
| 2104 | " <td>0.806941</td>\n", |
||
| 2105 | " <td>1.016220</td>\n", |
||
| 2106 | " <td>...</td>\n", |
||
| 2107 | " <td>2.220002</td>\n", |
||
| 2108 | " <td>0.971965</td>\n", |
||
| 2109 | " <td>0.934767</td>\n", |
||
| 2110 | " <td>0.105945</td>\n", |
||
| 2111 | " <td>0.529838</td>\n", |
||
| 2112 | " <td>0.834684</td>\n", |
||
| 2113 | " <td>0.672756</td>\n", |
||
| 2114 | " <td>1.000893</td>\n", |
||
| 2115 | " <td>0.435765</td>\n", |
||
| 2116 | " <td>0.602256</td>\n", |
||
| 2117 | " </tr>\n", |
||
| 2118 | " <tr>\n", |
||
| 2119 | " <th>100272147</th>\n", |
||
| 2120 | " <td>4.522154</td>\n", |
||
| 2121 | " <td>4.166729</td>\n", |
||
| 2122 | " <td>4.449916</td>\n", |
||
| 2123 | " <td>4.585680</td>\n", |
||
| 2124 | " <td>4.885539</td>\n", |
||
| 2125 | " <td>3.887128</td>\n", |
||
| 2126 | " <td>5.129546</td>\n", |
||
| 2127 | " <td>4.113461</td>\n", |
||
| 2128 | " <td>4.916463</td>\n", |
||
| 2129 | " <td>3.606867</td>\n", |
||
| 2130 | " <td>...</td>\n", |
||
| 2131 | " <td>5.878317</td>\n", |
||
| 2132 | " <td>3.876211</td>\n", |
||
| 2133 | " <td>4.675443</td>\n", |
||
| 2134 | " <td>4.671075</td>\n", |
||
| 2135 | " <td>4.599586</td>\n", |
||
| 2136 | " <td>4.571879</td>\n", |
||
| 2137 | " <td>5.662731</td>\n", |
||
| 2138 | " <td>5.320516</td>\n", |
||
| 2139 | " <td>4.588917</td>\n", |
||
| 2140 | " <td>4.575929</td>\n", |
||
| 2141 | " </tr>\n", |
||
| 2142 | " <tr>\n", |
||
| 2143 | " <th>100272216</th>\n", |
||
| 2144 | " <td>0.317102</td>\n", |
||
| 2145 | " <td>0.186426</td>\n", |
||
| 2146 | " <td>0.143926</td>\n", |
||
| 2147 | " <td>0.228025</td>\n", |
||
| 2148 | " <td>0.224785</td>\n", |
||
| 2149 | " <td>0.358273</td>\n", |
||
| 2150 | " <td>0.248630</td>\n", |
||
| 2151 | " <td>0.490062</td>\n", |
||
| 2152 | " <td>0.196283</td>\n", |
||
| 2153 | " <td>0.183147</td>\n", |
||
| 2154 | " <td>...</td>\n", |
||
| 2155 | " <td>0.076785</td>\n", |
||
| 2156 | " <td>0.211775</td>\n", |
||
| 2157 | " <td>0.113839</td>\n", |
||
| 2158 | " <td>0.062768</td>\n", |
||
| 2159 | " <td>1.888743</td>\n", |
||
| 2160 | " <td>0.543836</td>\n", |
||
| 2161 | " <td>0.491928</td>\n", |
||
| 2162 | " <td>0.038743</td>\n", |
||
| 2163 | " <td>0.156490</td>\n", |
||
| 2164 | " <td>0.027260</td>\n", |
||
| 2165 | " </tr>\n", |
||
| 2166 | " <tr>\n", |
||
| 2167 | " <th>100272217</th>\n", |
||
| 2168 | " <td>0.888558</td>\n", |
||
| 2169 | " <td>1.081672</td>\n", |
||
| 2170 | " <td>0.535628</td>\n", |
||
| 2171 | " <td>1.875071</td>\n", |
||
| 2172 | " <td>0.921858</td>\n", |
||
| 2173 | " <td>0.507322</td>\n", |
||
| 2174 | " <td>0.816486</td>\n", |
||
| 2175 | " <td>0.395231</td>\n", |
||
| 2176 | " <td>0.327062</td>\n", |
||
| 2177 | " <td>0.488304</td>\n", |
||
| 2178 | " <td>...</td>\n", |
||
| 2179 | " <td>1.590953</td>\n", |
||
| 2180 | " <td>0.640856</td>\n", |
||
| 2181 | " <td>0.574010</td>\n", |
||
| 2182 | " <td>0.210361</td>\n", |
||
| 2183 | " <td>0.445683</td>\n", |
||
| 2184 | " <td>0.571828</td>\n", |
||
| 2185 | " <td>0.559745</td>\n", |
||
| 2186 | " <td>0.433005</td>\n", |
||
| 2187 | " <td>0.818466</td>\n", |
||
| 2188 | " <td>0.503680</td>\n", |
||
| 2189 | " </tr>\n", |
||
| 2190 | " <tr>\n", |
||
| 2191 | " <th>100272228</th>\n", |
||
| 2192 | " <td>1.162634</td>\n", |
||
| 2193 | " <td>0.969318</td>\n", |
||
| 2194 | " <td>1.482511</td>\n", |
||
| 2195 | " <td>1.483449</td>\n", |
||
| 2196 | " <td>0.769280</td>\n", |
||
| 2197 | " <td>0.272411</td>\n", |
||
| 2198 | " <td>2.131252</td>\n", |
||
| 2199 | " <td>1.101936</td>\n", |
||
| 2200 | " <td>0.858047</td>\n", |
||
| 2201 | " <td>1.873479</td>\n", |
||
| 2202 | " <td>...</td>\n", |
||
| 2203 | " <td>2.231822</td>\n", |
||
| 2204 | " <td>0.542195</td>\n", |
||
| 2205 | " <td>1.069636</td>\n", |
||
| 2206 | " <td>0.187633</td>\n", |
||
| 2207 | " <td>0.321110</td>\n", |
||
| 2208 | " <td>0.826413</td>\n", |
||
| 2209 | " <td>0.900913</td>\n", |
||
| 2210 | " <td>0.489285</td>\n", |
||
| 2211 | " <td>0.350919</td>\n", |
||
| 2212 | " <td>0.683409</td>\n", |
||
| 2213 | " </tr>\n", |
||
| 2214 | " <tr>\n", |
||
| 2215 | " <th>100286793</th>\n", |
||
| 2216 | " <td>3.749544</td>\n", |
||
| 2217 | " <td>3.279243</td>\n", |
||
| 2218 | " <td>2.472683</td>\n", |
||
| 2219 | " <td>4.429526</td>\n", |
||
| 2220 | " <td>3.590167</td>\n", |
||
| 2221 | " <td>2.512924</td>\n", |
||
| 2222 | " <td>4.620199</td>\n", |
||
| 2223 | " <td>2.752506</td>\n", |
||
| 2224 | " <td>2.475664</td>\n", |
||
| 2225 | " <td>4.030156</td>\n", |
||
| 2226 | " <td>...</td>\n", |
||
| 2227 | " <td>2.899274</td>\n", |
||
| 2228 | " <td>3.363391</td>\n", |
||
| 2229 | " <td>2.931948</td>\n", |
||
| 2230 | " <td>3.169480</td>\n", |
||
| 2231 | " <td>3.779393</td>\n", |
||
| 2232 | " <td>2.941597</td>\n", |
||
| 2233 | " <td>4.904492</td>\n", |
||
| 2234 | " <td>4.198462</td>\n", |
||
| 2235 | " <td>2.336612</td>\n", |
||
| 2236 | " <td>3.119572</td>\n", |
||
| 2237 | " </tr>\n", |
||
| 2238 | " <tr>\n", |
||
| 2239 | " <th>100286844</th>\n", |
||
| 2240 | " <td>0.577625</td>\n", |
||
| 2241 | " <td>0.485676</td>\n", |
||
| 2242 | " <td>0.387462</td>\n", |
||
| 2243 | " <td>0.664894</td>\n", |
||
| 2244 | " <td>0.509770</td>\n", |
||
| 2245 | " <td>0.269866</td>\n", |
||
| 2246 | " <td>1.027578</td>\n", |
||
| 2247 | " <td>0.293341</td>\n", |
||
| 2248 | " <td>0.420398</td>\n", |
||
| 2249 | " <td>0.283191</td>\n", |
||
| 2250 | " <td>...</td>\n", |
||
| 2251 | " <td>0.905923</td>\n", |
||
| 2252 | " <td>0.299887</td>\n", |
||
| 2253 | " <td>0.299501</td>\n", |
||
| 2254 | " <td>0.202525</td>\n", |
||
| 2255 | " <td>0.316737</td>\n", |
||
| 2256 | " <td>0.317757</td>\n", |
||
| 2257 | " <td>0.184413</td>\n", |
||
| 2258 | " <td>0.434553</td>\n", |
||
| 2259 | " <td>0.289544</td>\n", |
||
| 2260 | " <td>0.728117</td>\n", |
||
| 2261 | " </tr>\n", |
||
| 2262 | " <tr>\n", |
||
| 2263 | " <th>100287227</th>\n", |
||
| 2264 | " <td>0.478071</td>\n", |
||
| 2265 | " <td>0.168666</td>\n", |
||
| 2266 | " <td>0.180026</td>\n", |
||
| 2267 | " <td>0.284478</td>\n", |
||
| 2268 | " <td>0.157005</td>\n", |
||
| 2269 | " <td>0.488973</td>\n", |
||
| 2270 | " <td>0.316336</td>\n", |
||
| 2271 | " <td>0.159785</td>\n", |
||
| 2272 | " <td>0.207284</td>\n", |
||
| 2273 | " <td>0.164729</td>\n", |
||
| 2274 | " <td>...</td>\n", |
||
| 2275 | " <td>0.432181</td>\n", |
||
| 2276 | " <td>0.238998</td>\n", |
||
| 2277 | " <td>0.406512</td>\n", |
||
| 2278 | " <td>0.025150</td>\n", |
||
| 2279 | " <td>0.030891</td>\n", |
||
| 2280 | " <td>0.334906</td>\n", |
||
| 2281 | " <td>0.054436</td>\n", |
||
| 2282 | " <td>0.165105</td>\n", |
||
| 2283 | " <td>0.205411</td>\n", |
||
| 2284 | " <td>0.222096</td>\n", |
||
| 2285 | " </tr>\n", |
||
| 2286 | " <tr>\n", |
||
| 2287 | " <th>100287569</th>\n", |
||
| 2288 | " <td>0.248828</td>\n", |
||
| 2289 | " <td>0.000000</td>\n", |
||
| 2290 | " <td>0.000000</td>\n", |
||
| 2291 | " <td>0.140081</td>\n", |
||
| 2292 | " <td>0.088759</td>\n", |
||
| 2293 | " <td>0.000000</td>\n", |
||
| 2294 | " <td>0.000000</td>\n", |
||
| 2295 | " <td>0.637993</td>\n", |
||
| 2296 | " <td>0.000000</td>\n", |
||
| 2297 | " <td>0.647825</td>\n", |
||
| 2298 | " <td>...</td>\n", |
||
| 2299 | " <td>0.000000</td>\n", |
||
| 2300 | " <td>0.000000</td>\n", |
||
| 2301 | " <td>0.297210</td>\n", |
||
| 2302 | " <td>0.268763</td>\n", |
||
| 2303 | " <td>1.733056</td>\n", |
||
| 2304 | " <td>0.158122</td>\n", |
||
| 2305 | " <td>0.487028</td>\n", |
||
| 2306 | " <td>0.093247</td>\n", |
||
| 2307 | " <td>0.000000</td>\n", |
||
| 2308 | " <td>0.870693</td>\n", |
||
| 2309 | " </tr>\n", |
||
| 2310 | " <tr>\n", |
||
| 2311 | " <th>100287704</th>\n", |
||
| 2312 | " <td>0.000000</td>\n", |
||
| 2313 | " <td>0.000000</td>\n", |
||
| 2314 | " <td>0.000000</td>\n", |
||
| 2315 | " <td>0.000000</td>\n", |
||
| 2316 | " <td>0.000000</td>\n", |
||
| 2317 | " <td>0.000000</td>\n", |
||
| 2318 | " <td>0.000000</td>\n", |
||
| 2319 | " <td>0.000000</td>\n", |
||
| 2320 | " <td>0.000000</td>\n", |
||
| 2321 | " <td>0.000000</td>\n", |
||
| 2322 | " <td>...</td>\n", |
||
| 2323 | " <td>0.000000</td>\n", |
||
| 2324 | " <td>0.000000</td>\n", |
||
| 2325 | " <td>0.000000</td>\n", |
||
| 2326 | " <td>0.000000</td>\n", |
||
| 2327 | " <td>0.000000</td>\n", |
||
| 2328 | " <td>0.000000</td>\n", |
||
| 2329 | " <td>0.000000</td>\n", |
||
| 2330 | " <td>0.000000</td>\n", |
||
| 2331 | " <td>0.000000</td>\n", |
||
| 2332 | " <td>0.000000</td>\n", |
||
| 2333 | " </tr>\n", |
||
| 2334 | " <tr>\n", |
||
| 2335 | " <th>100287718</th>\n", |
||
| 2336 | " <td>0.000000</td>\n", |
||
| 2337 | " <td>0.000000</td>\n", |
||
| 2338 | " <td>0.000000</td>\n", |
||
| 2339 | " <td>0.000000</td>\n", |
||
| 2340 | " <td>0.000000</td>\n", |
||
| 2341 | " <td>0.000000</td>\n", |
||
| 2342 | " <td>0.000000</td>\n", |
||
| 2343 | " <td>0.000000</td>\n", |
||
| 2344 | " <td>0.000000</td>\n", |
||
| 2345 | " <td>0.000000</td>\n", |
||
| 2346 | " <td>...</td>\n", |
||
| 2347 | " <td>0.000000</td>\n", |
||
| 2348 | " <td>0.000000</td>\n", |
||
| 2349 | " <td>0.000000</td>\n", |
||
| 2350 | " <td>0.000000</td>\n", |
||
| 2351 | " <td>0.000000</td>\n", |
||
| 2352 | " <td>0.000000</td>\n", |
||
| 2353 | " <td>0.000000</td>\n", |
||
| 2354 | " <td>0.000000</td>\n", |
||
| 2355 | " <td>0.000000</td>\n", |
||
| 2356 | " <td>0.000000</td>\n", |
||
| 2357 | " </tr>\n", |
||
| 2358 | " <tr>\n", |
||
| 2359 | " <th>100288380</th>\n", |
||
| 2360 | " <td>0.240305</td>\n", |
||
| 2361 | " <td>0.066049</td>\n", |
||
| 2362 | " <td>0.000000</td>\n", |
||
| 2363 | " <td>0.337612</td>\n", |
||
| 2364 | " <td>0.000000</td>\n", |
||
| 2365 | " <td>0.000000</td>\n", |
||
| 2366 | " <td>0.000000</td>\n", |
||
| 2367 | " <td>0.378000</td>\n", |
||
| 2368 | " <td>0.178236</td>\n", |
||
| 2369 | " <td>0.186226</td>\n", |
||
| 2370 | " <td>...</td>\n", |
||
| 2371 | " <td>0.483296</td>\n", |
||
| 2372 | " <td>0.085724</td>\n", |
||
| 2373 | " <td>0.000000</td>\n", |
||
| 2374 | " <td>0.078789</td>\n", |
||
| 2375 | " <td>0.000000</td>\n", |
||
| 2376 | " <td>0.130626</td>\n", |
||
| 2377 | " <td>0.177386</td>\n", |
||
| 2378 | " <td>0.346942</td>\n", |
||
| 2379 | " <td>0.000000</td>\n", |
||
| 2380 | " <td>0.000000</td>\n", |
||
| 2381 | " </tr>\n", |
||
| 2382 | " <tr>\n", |
||
| 2383 | " <th>100288778</th>\n", |
||
| 2384 | " <td>6.790537</td>\n", |
||
| 2385 | " <td>6.140643</td>\n", |
||
| 2386 | " <td>5.387459</td>\n", |
||
| 2387 | " <td>6.559554</td>\n", |
||
| 2388 | " <td>6.325461</td>\n", |
||
| 2389 | " <td>4.533454</td>\n", |
||
| 2390 | " <td>5.916186</td>\n", |
||
| 2391 | " <td>5.359674</td>\n", |
||
| 2392 | " <td>5.232589</td>\n", |
||
| 2393 | " <td>4.997729</td>\n", |
||
| 2394 | " <td>...</td>\n", |
||
| 2395 | " <td>6.593197</td>\n", |
||
| 2396 | " <td>4.981928</td>\n", |
||
| 2397 | " <td>6.003078</td>\n", |
||
| 2398 | " <td>5.389232</td>\n", |
||
| 2399 | " <td>5.606450</td>\n", |
||
| 2400 | " <td>5.122558</td>\n", |
||
| 2401 | " <td>5.558330</td>\n", |
||
| 2402 | " <td>4.949391</td>\n", |
||
| 2403 | " <td>6.165033</td>\n", |
||
| 2404 | " <td>6.198619</td>\n", |
||
| 2405 | " </tr>\n", |
||
| 2406 | " <tr>\n", |
||
| 2407 | " <th>100288801</th>\n", |
||
| 2408 | " <td>0.000000</td>\n", |
||
| 2409 | " <td>0.024495</td>\n", |
||
| 2410 | " <td>0.000000</td>\n", |
||
| 2411 | " <td>0.027428</td>\n", |
||
| 2412 | " <td>0.000000</td>\n", |
||
| 2413 | " <td>0.029885</td>\n", |
||
| 2414 | " <td>0.000000</td>\n", |
||
| 2415 | " <td>0.000000</td>\n", |
||
| 2416 | " <td>0.000000</td>\n", |
||
| 2417 | " <td>0.093848</td>\n", |
||
| 2418 | " <td>...</td>\n", |
||
| 2419 | " <td>0.051291</td>\n", |
||
| 2420 | " <td>0.032005</td>\n", |
||
| 2421 | " <td>0.000000</td>\n", |
||
| 2422 | " <td>0.000000</td>\n", |
||
| 2423 | " <td>0.000000</td>\n", |
||
| 2424 | " <td>0.000000</td>\n", |
||
| 2425 | " <td>0.000000</td>\n", |
||
| 2426 | " <td>0.018047</td>\n", |
||
| 2427 | " <td>0.000000</td>\n", |
||
| 2428 | " <td>0.000000</td>\n", |
||
| 2429 | " </tr>\n", |
||
| 2430 | " <tr>\n", |
||
| 2431 | " <th>100289341</th>\n", |
||
| 2432 | " <td>0.554602</td>\n", |
||
| 2433 | " <td>1.419892</td>\n", |
||
| 2434 | " <td>0.586812</td>\n", |
||
| 2435 | " <td>1.618622</td>\n", |
||
| 2436 | " <td>1.300235</td>\n", |
||
| 2437 | " <td>1.445110</td>\n", |
||
| 2438 | " <td>0.809817</td>\n", |
||
| 2439 | " <td>1.299766</td>\n", |
||
| 2440 | " <td>0.808111</td>\n", |
||
| 2441 | " <td>0.659194</td>\n", |
||
| 2442 | " <td>...</td>\n", |
||
| 2443 | " <td>1.854680</td>\n", |
||
| 2444 | " <td>0.509933</td>\n", |
||
| 2445 | " <td>1.492218</td>\n", |
||
| 2446 | " <td>0.808288</td>\n", |
||
| 2447 | " <td>1.114229</td>\n", |
||
| 2448 | " <td>1.576462</td>\n", |
||
| 2449 | " <td>1.462319</td>\n", |
||
| 2450 | " <td>2.086270</td>\n", |
||
| 2451 | " <td>1.258471</td>\n", |
||
| 2452 | " <td>1.926313</td>\n", |
||
| 2453 | " </tr>\n", |
||
| 2454 | " <tr>\n", |
||
| 2455 | " <th>100289635</th>\n", |
||
| 2456 | " <td>4.013096</td>\n", |
||
| 2457 | " <td>3.798639</td>\n", |
||
| 2458 | " <td>3.956554</td>\n", |
||
| 2459 | " <td>3.899833</td>\n", |
||
| 2460 | " <td>3.363665</td>\n", |
||
| 2461 | " <td>3.482014</td>\n", |
||
| 2462 | " <td>3.855801</td>\n", |
||
| 2463 | " <td>3.120055</td>\n", |
||
| 2464 | " <td>3.680738</td>\n", |
||
| 2465 | " <td>3.217935</td>\n", |
||
| 2466 | " <td>...</td>\n", |
||
| 2467 | " <td>3.453396</td>\n", |
||
| 2468 | " <td>3.397759</td>\n", |
||
| 2469 | " <td>3.569581</td>\n", |
||
| 2470 | " <td>2.940335</td>\n", |
||
| 2471 | " <td>3.299210</td>\n", |
||
| 2472 | " <td>2.792782</td>\n", |
||
| 2473 | " <td>3.012142</td>\n", |
||
| 2474 | " <td>3.320961</td>\n", |
||
| 2475 | " <td>3.034379</td>\n", |
||
| 2476 | " <td>3.507408</td>\n", |
||
| 2477 | " </tr>\n", |
||
| 2478 | " <tr>\n", |
||
| 2479 | " <th>100294720</th>\n", |
||
| 2480 | " <td>0.000000</td>\n", |
||
| 2481 | " <td>0.000000</td>\n", |
||
| 2482 | " <td>0.000000</td>\n", |
||
| 2483 | " <td>0.043830</td>\n", |
||
| 2484 | " <td>0.000000</td>\n", |
||
| 2485 | " <td>0.000000</td>\n", |
||
| 2486 | " <td>0.000000</td>\n", |
||
| 2487 | " <td>0.000000</td>\n", |
||
| 2488 | " <td>0.000000</td>\n", |
||
| 2489 | " <td>0.030316</td>\n", |
||
| 2490 | " <td>...</td>\n", |
||
| 2491 | " <td>0.000000</td>\n", |
||
| 2492 | " <td>0.000000</td>\n", |
||
| 2493 | " <td>0.000000</td>\n", |
||
| 2494 | " <td>0.091862</td>\n", |
||
| 2495 | " <td>0.000000</td>\n", |
||
| 2496 | " <td>0.000000</td>\n", |
||
| 2497 | " <td>0.000000</td>\n", |
||
| 2498 | " <td>0.000000</td>\n", |
||
| 2499 | " <td>0.000000</td>\n", |
||
| 2500 | " <td>0.000000</td>\n", |
||
| 2501 | " </tr>\n", |
||
| 2502 | " <tr>\n", |
||
| 2503 | " <th>100302401</th>\n", |
||
| 2504 | " <td>0.453696</td>\n", |
||
| 2505 | " <td>0.364804</td>\n", |
||
| 2506 | " <td>0.224008</td>\n", |
||
| 2507 | " <td>0.672864</td>\n", |
||
| 2508 | " <td>0.650317</td>\n", |
||
| 2509 | " <td>1.193713</td>\n", |
||
| 2510 | " <td>1.082908</td>\n", |
||
| 2511 | " <td>0.427754</td>\n", |
||
| 2512 | " <td>0.756725</td>\n", |
||
| 2513 | " <td>0.145178</td>\n", |
||
| 2514 | " <td>...</td>\n", |
||
| 2515 | " <td>0.652977</td>\n", |
||
| 2516 | " <td>0.249060</td>\n", |
||
| 2517 | " <td>0.581439</td>\n", |
||
| 2518 | " <td>0.362663</td>\n", |
||
| 2519 | " <td>0.533748</td>\n", |
||
| 2520 | " <td>0.387988</td>\n", |
||
| 2521 | " <td>0.907954</td>\n", |
||
| 2522 | " <td>1.447773</td>\n", |
||
| 2523 | " <td>1.464589</td>\n", |
||
| 2524 | " <td>0.650250</td>\n", |
||
| 2525 | " </tr>\n", |
||
| 2526 | " <tr>\n", |
||
| 2527 | " <th>100302640</th>\n", |
||
| 2528 | " <td>0.000000</td>\n", |
||
| 2529 | " <td>0.104932</td>\n", |
||
| 2530 | " <td>0.107251</td>\n", |
||
| 2531 | " <td>0.000000</td>\n", |
||
| 2532 | " <td>0.000000</td>\n", |
||
| 2533 | " <td>0.107661</td>\n", |
||
| 2534 | " <td>0.793848</td>\n", |
||
| 2535 | " <td>0.076033</td>\n", |
||
| 2536 | " <td>0.000000</td>\n", |
||
| 2537 | " <td>0.477775</td>\n", |
||
| 2538 | " <td>...</td>\n", |
||
| 2539 | " <td>0.019199</td>\n", |
||
| 2540 | " <td>0.000000</td>\n", |
||
| 2541 | " <td>0.642079</td>\n", |
||
| 2542 | " <td>0.146898</td>\n", |
||
| 2543 | " <td>2.474504</td>\n", |
||
| 2544 | " <td>0.000000</td>\n", |
||
| 2545 | " <td>0.969502</td>\n", |
||
| 2546 | " <td>1.071410</td>\n", |
||
| 2547 | " <td>0.000000</td>\n", |
||
| 2548 | " <td>0.912122</td>\n", |
||
| 2549 | " </tr>\n", |
||
| 2550 | " <tr>\n", |
||
| 2551 | " <th>100302650</th>\n", |
||
| 2552 | " <td>1.947356</td>\n", |
||
| 2553 | " <td>2.175498</td>\n", |
||
| 2554 | " <td>0.897772</td>\n", |
||
| 2555 | " <td>1.959929</td>\n", |
||
| 2556 | " <td>1.168812</td>\n", |
||
| 2557 | " <td>3.319754</td>\n", |
||
| 2558 | " <td>0.826337</td>\n", |
||
| 2559 | " <td>4.768559</td>\n", |
||
| 2560 | " <td>0.796422</td>\n", |
||
| 2561 | " <td>0.823880</td>\n", |
||
| 2562 | " <td>...</td>\n", |
||
| 2563 | " <td>1.136914</td>\n", |
||
| 2564 | " <td>1.439982</td>\n", |
||
| 2565 | " <td>2.574464</td>\n", |
||
| 2566 | " <td>0.854546</td>\n", |
||
| 2567 | " <td>0.781950</td>\n", |
||
| 2568 | " <td>1.542125</td>\n", |
||
| 2569 | " <td>0.491698</td>\n", |
||
| 2570 | " <td>0.583729</td>\n", |
||
| 2571 | " <td>0.521218</td>\n", |
||
| 2572 | " <td>4.386915</td>\n", |
||
| 2573 | " </tr>\n", |
||
| 2574 | " <tr>\n", |
||
| 2575 | " <th>100302692</th>\n", |
||
| 2576 | " <td>1.165293</td>\n", |
||
| 2577 | " <td>0.757206</td>\n", |
||
| 2578 | " <td>1.057820</td>\n", |
||
| 2579 | " <td>1.318934</td>\n", |
||
| 2580 | " <td>1.043475</td>\n", |
||
| 2581 | " <td>1.137322</td>\n", |
||
| 2582 | " <td>1.929626</td>\n", |
||
| 2583 | " <td>0.876302</td>\n", |
||
| 2584 | " <td>0.727365</td>\n", |
||
| 2585 | " <td>0.428572</td>\n", |
||
| 2586 | " <td>...</td>\n", |
||
| 2587 | " <td>1.010132</td>\n", |
||
| 2588 | " <td>1.275280</td>\n", |
||
| 2589 | " <td>0.552697</td>\n", |
||
| 2590 | " <td>0.986176</td>\n", |
||
| 2591 | " <td>0.952333</td>\n", |
||
| 2592 | " <td>0.542730</td>\n", |
||
| 2593 | " <td>0.421700</td>\n", |
||
| 2594 | " <td>0.510551</td>\n", |
||
| 2595 | " <td>0.436014</td>\n", |
||
| 2596 | " <td>1.045705</td>\n", |
||
| 2597 | " </tr>\n", |
||
| 2598 | " <tr>\n", |
||
| 2599 | " <th>100302736</th>\n", |
||
| 2600 | " <td>1.477144</td>\n", |
||
| 2601 | " <td>0.346627</td>\n", |
||
| 2602 | " <td>1.343656</td>\n", |
||
| 2603 | " <td>0.000000</td>\n", |
||
| 2604 | " <td>1.240577</td>\n", |
||
| 2605 | " <td>1.583428</td>\n", |
||
| 2606 | " <td>0.234748</td>\n", |
||
| 2607 | " <td>0.608218</td>\n", |
||
| 2608 | " <td>0.297075</td>\n", |
||
| 2609 | " <td>0.860072</td>\n", |
||
| 2610 | " <td>...</td>\n", |
||
| 2611 | " <td>1.570871</td>\n", |
||
| 2612 | " <td>0.000000</td>\n", |
||
| 2613 | " <td>1.594325</td>\n", |
||
| 2614 | " <td>2.214244</td>\n", |
||
| 2615 | " <td>2.503191</td>\n", |
||
| 2616 | " <td>1.636781</td>\n", |
||
| 2617 | " <td>0.250190</td>\n", |
||
| 2618 | " <td>3.023961</td>\n", |
||
| 2619 | " <td>2.930088</td>\n", |
||
| 2620 | " <td>0.894343</td>\n", |
||
| 2621 | " </tr>\n", |
||
| 2622 | " <tr>\n", |
||
| 2623 | " <th>100303453</th>\n", |
||
| 2624 | " <td>0.045918</td>\n", |
||
| 2625 | " <td>0.124266</td>\n", |
||
| 2626 | " <td>0.036664</td>\n", |
||
| 2627 | " <td>0.227546</td>\n", |
||
| 2628 | " <td>0.066830</td>\n", |
||
| 2629 | " <td>0.105619</td>\n", |
||
| 2630 | " <td>0.217259</td>\n", |
||
| 2631 | " <td>0.000000</td>\n", |
||
| 2632 | " <td>0.000000</td>\n", |
||
| 2633 | " <td>0.000000</td>\n", |
||
| 2634 | " <td>...</td>\n", |
||
| 2635 | " <td>0.052402</td>\n", |
||
| 2636 | " <td>0.000000</td>\n", |
||
| 2637 | " <td>0.000000</td>\n", |
||
| 2638 | " <td>0.000000</td>\n", |
||
| 2639 | " <td>0.066504</td>\n", |
||
| 2640 | " <td>0.000000</td>\n", |
||
| 2641 | " <td>0.000000</td>\n", |
||
| 2642 | " <td>0.050786</td>\n", |
||
| 2643 | " <td>0.180068</td>\n", |
||
| 2644 | " <td>0.000000</td>\n", |
||
| 2645 | " </tr>\n", |
||
| 2646 | " <tr>\n", |
||
| 2647 | " <th>100303728</th>\n", |
||
| 2648 | " <td>0.596866</td>\n", |
||
| 2649 | " <td>0.757314</td>\n", |
||
| 2650 | " <td>0.566678</td>\n", |
||
| 2651 | " <td>1.519342</td>\n", |
||
| 2652 | " <td>0.818998</td>\n", |
||
| 2653 | " <td>0.618132</td>\n", |
||
| 2654 | " <td>1.135417</td>\n", |
||
| 2655 | " <td>0.860897</td>\n", |
||
| 2656 | " <td>0.457222</td>\n", |
||
| 2657 | " <td>0.802506</td>\n", |
||
| 2658 | " <td>...</td>\n", |
||
| 2659 | " <td>1.734920</td>\n", |
||
| 2660 | " <td>0.570759</td>\n", |
||
| 2661 | " <td>0.795158</td>\n", |
||
| 2662 | " <td>0.475755</td>\n", |
||
| 2663 | " <td>0.689829</td>\n", |
||
| 2664 | " <td>0.709897</td>\n", |
||
| 2665 | " <td>0.812898</td>\n", |
||
| 2666 | " <td>0.446765</td>\n", |
||
| 2667 | " <td>0.257565</td>\n", |
||
| 2668 | " <td>0.665080</td>\n", |
||
| 2669 | " </tr>\n", |
||
| 2670 | " </tbody>\n", |
||
| 2671 | "</table>\n", |
||
| 2672 | "<p>20531 rows × 427 columns</p>\n", |
||
| 2673 | "</div>" |
||
| 2674 | ], |
||
| 2675 | "text/plain": [ |
||
| 2676 | " TCGA-2F-A9KO-01A-11R-A38B-07 TCGA-2F-A9KP-01A-11R-A38B-07 \\\n", |
||
| 2677 | "ENTREZID \n", |
||
| 2678 | "1 1.161494 0.622532 \n", |
||
| 2679 | "2 8.034762 7.703466 \n", |
||
| 2680 | "9 2.167711 2.047625 \n", |
||
| 2681 | "10 0.000000 0.117556 \n", |
||
| 2682 | "12 2.467830 2.420112 \n", |
||
| 2683 | "13 1.607347 0.666421 \n", |
||
| 2684 | "14 6.712206 6.844482 \n", |
||
| 2685 | "15 0.080575 0.000000 \n", |
||
| 2686 | "16 6.763091 6.625150 \n", |
||
| 2687 | "18 3.988948 4.263293 \n", |
||
| 2688 | "19 2.616904 1.357553 \n", |
||
| 2689 | "20 1.961844 3.090204 \n", |
||
| 2690 | "21 0.612701 2.171850 \n", |
||
| 2691 | "22 3.963608 3.558606 \n", |
||
| 2692 | "23 5.866598 5.853114 \n", |
||
| 2693 | "24 1.926233 0.045424 \n", |
||
| 2694 | "25 4.220049 4.463162 \n", |
||
| 2695 | "26 1.534503 0.457208 \n", |
||
| 2696 | "27 3.009672 2.538702 \n", |
||
| 2697 | "28 3.553466 0.071613 \n", |
||
| 2698 | "29 4.252114 5.314371 \n", |
||
| 2699 | "30 6.283626 7.041333 \n", |
||
| 2700 | "31 4.650181 4.974986 \n", |
||
| 2701 | "32 1.287524 0.505654 \n", |
||
| 2702 | "33 0.407168 0.272536 \n", |
||
| 2703 | "34 4.699257 5.466270 \n", |
||
| 2704 | "35 4.221315 4.060692 \n", |
||
| 2705 | "36 2.546490 4.141481 \n", |
||
| 2706 | "37 8.221469 8.484431 \n", |
||
| 2707 | "38 4.277477 4.804687 \n", |
||
| 2708 | "... ... ... \n", |
||
| 2709 | "100271722 1.381865 0.559305 \n", |
||
| 2710 | "100271831 2.886801 1.372946 \n", |
||
| 2711 | "100271832 0.000000 0.037902 \n", |
||
| 2712 | "100271835 1.174398 0.086516 \n", |
||
| 2713 | "100271836 4.184755 3.800484 \n", |
||
| 2714 | "100271849 1.324908 1.796684 \n", |
||
| 2715 | "100272146 1.431248 1.258686 \n", |
||
| 2716 | "100272147 4.522154 4.166729 \n", |
||
| 2717 | "100272216 0.317102 0.186426 \n", |
||
| 2718 | "100272217 0.888558 1.081672 \n", |
||
| 2719 | "100272228 1.162634 0.969318 \n", |
||
| 2720 | "100286793 3.749544 3.279243 \n", |
||
| 2721 | "100286844 0.577625 0.485676 \n", |
||
| 2722 | "100287227 0.478071 0.168666 \n", |
||
| 2723 | "100287569 0.248828 0.000000 \n", |
||
| 2724 | "100287704 0.000000 0.000000 \n", |
||
| 2725 | "100287718 0.000000 0.000000 \n", |
||
| 2726 | "100288380 0.240305 0.066049 \n", |
||
| 2727 | "100288778 6.790537 6.140643 \n", |
||
| 2728 | "100288801 0.000000 0.024495 \n", |
||
| 2729 | "100289341 0.554602 1.419892 \n", |
||
| 2730 | "100289635 4.013096 3.798639 \n", |
||
| 2731 | "100294720 0.000000 0.000000 \n", |
||
| 2732 | "100302401 0.453696 0.364804 \n", |
||
| 2733 | "100302640 0.000000 0.104932 \n", |
||
| 2734 | "100302650 1.947356 2.175498 \n", |
||
| 2735 | "100302692 1.165293 0.757206 \n", |
||
| 2736 | "100302736 1.477144 0.346627 \n", |
||
| 2737 | "100303453 0.045918 0.124266 \n", |
||
| 2738 | "100303728 0.596866 0.757314 \n", |
||
| 2739 | "\n", |
||
| 2740 | " TCGA-2F-A9KQ-01A-11R-A38B-07 TCGA-2F-A9KR-01A-11R-A38B-07 \\\n", |
||
| 2741 | "ENTREZID \n", |
||
| 2742 | "1 0.837536 1.063692 \n", |
||
| 2743 | "2 7.782663 6.971443 \n", |
||
| 2744 | "9 2.951153 1.890493 \n", |
||
| 2745 | "10 0.000000 0.289701 \n", |
||
| 2746 | "12 0.644298 4.545485 \n", |
||
| 2747 | "13 2.125684 3.496252 \n", |
||
| 2748 | "14 6.394740 7.557387 \n", |
||
| 2749 | "15 0.211327 0.178252 \n", |
||
| 2750 | "16 6.082827 5.402623 \n", |
||
| 2751 | "18 4.377654 2.923749 \n", |
||
| 2752 | "19 2.887098 2.551879 \n", |
||
| 2753 | "20 2.750104 2.616212 \n", |
||
| 2754 | "21 1.529668 0.874337 \n", |
||
| 2755 | "22 3.232821 4.034338 \n", |
||
| 2756 | "23 5.628400 5.752864 \n", |
||
| 2757 | "24 0.055199 0.088273 \n", |
||
| 2758 | "25 3.714227 4.611958 \n", |
||
| 2759 | "26 1.656747 3.666896 \n", |
||
| 2760 | "27 2.058677 2.333097 \n", |
||
| 2761 | "28 4.043810 1.998537 \n", |
||
| 2762 | "29 4.405773 4.809010 \n", |
||
| 2763 | "30 6.944863 6.671349 \n", |
||
| 2764 | "31 4.473319 5.608256 \n", |
||
| 2765 | "32 0.763694 1.874325 \n", |
||
| 2766 | "33 0.191193 0.570630 \n", |
||
| 2767 | "34 5.665893 5.476256 \n", |
||
| 2768 | "35 5.565621 4.414742 \n", |
||
| 2769 | "36 4.002538 2.430160 \n", |
||
| 2770 | "37 8.220426 7.658984 \n", |
||
| 2771 | "38 4.168925 2.910270 \n", |
||
| 2772 | "... ... ... \n", |
||
| 2773 | "100271722 2.507135 2.419759 \n", |
||
| 2774 | "100271831 3.480265 3.585413 \n", |
||
| 2775 | "100271832 0.000000 0.000000 \n", |
||
| 2776 | "100271835 0.439386 0.387716 \n", |
||
| 2777 | "100271836 2.966304 3.708623 \n", |
||
| 2778 | "100271849 0.396215 2.046291 \n", |
||
| 2779 | "100272146 1.048321 1.689908 \n", |
||
| 2780 | "100272147 4.449916 4.585680 \n", |
||
| 2781 | "100272216 0.143926 0.228025 \n", |
||
| 2782 | "100272217 0.535628 1.875071 \n", |
||
| 2783 | "100272228 1.482511 1.483449 \n", |
||
| 2784 | "100286793 2.472683 4.429526 \n", |
||
| 2785 | "100286844 0.387462 0.664894 \n", |
||
| 2786 | "100287227 0.180026 0.284478 \n", |
||
| 2787 | "100287569 0.000000 0.140081 \n", |
||
| 2788 | "100287704 0.000000 0.000000 \n", |
||
| 2789 | "100287718 0.000000 0.000000 \n", |
||
| 2790 | "100288380 0.000000 0.337612 \n", |
||
| 2791 | "100288778 5.387459 6.559554 \n", |
||
| 2792 | "100288801 0.000000 0.027428 \n", |
||
| 2793 | "100289341 0.586812 1.618622 \n", |
||
| 2794 | "100289635 3.956554 3.899833 \n", |
||
| 2795 | "100294720 0.000000 0.043830 \n", |
||
| 2796 | "100302401 0.224008 0.672864 \n", |
||
| 2797 | "100302640 0.107251 0.000000 \n", |
||
| 2798 | "100302650 0.897772 1.959929 \n", |
||
| 2799 | "100302692 1.057820 1.318934 \n", |
||
| 2800 | "100302736 1.343656 0.000000 \n", |
||
| 2801 | "100303453 0.036664 0.227546 \n", |
||
| 2802 | "100303728 0.566678 1.519342 \n", |
||
| 2803 | "\n", |
||
| 2804 | " TCGA-2F-A9KT-01A-11R-A38B-07 TCGA-2F-A9KW-01A-11R-A38B-07 \\\n", |
||
| 2805 | "ENTREZID \n", |
||
| 2806 | "1 0.732667 0.912991 \n", |
||
| 2807 | "2 6.047535 8.625286 \n", |
||
| 2808 | "9 1.988667 2.454169 \n", |
||
| 2809 | "10 0.000000 0.000000 \n", |
||
| 2810 | "12 0.052373 1.322490 \n", |
||
| 2811 | "13 0.287708 0.288064 \n", |
||
| 2812 | "14 6.178432 6.353666 \n", |
||
| 2813 | "15 0.086826 0.000000 \n", |
||
| 2814 | "16 5.592732 7.433563 \n", |
||
| 2815 | "18 4.049974 1.382311 \n", |
||
| 2816 | "19 3.340053 4.326013 \n", |
||
| 2817 | "20 4.824872 1.875221 \n", |
||
| 2818 | "21 0.658170 3.151741 \n", |
||
| 2819 | "22 3.022397 2.919716 \n", |
||
| 2820 | "23 5.695003 6.594964 \n", |
||
| 2821 | "24 0.064751 1.128087 \n", |
||
| 2822 | "25 4.654495 4.446463 \n", |
||
| 2823 | "26 0.465448 0.336673 \n", |
||
| 2824 | "27 2.186895 3.246505 \n", |
||
| 2825 | "28 3.651975 0.970909 \n", |
||
| 2826 | "29 4.823228 3.875454 \n", |
||
| 2827 | "30 6.951327 5.968195 \n", |
||
| 2828 | "31 5.003486 4.237128 \n", |
||
| 2829 | "32 0.733106 0.757118 \n", |
||
| 2830 | "33 0.159784 0.000000 \n", |
||
| 2831 | "34 3.955474 4.042493 \n", |
||
| 2832 | "35 4.286086 4.366536 \n", |
||
| 2833 | "36 2.272737 2.416162 \n", |
||
| 2834 | "37 7.298956 7.522056 \n", |
||
| 2835 | "38 3.432268 4.960705 \n", |
||
| 2836 | "... ... ... \n", |
||
| 2837 | "100271722 2.330566 0.527452 \n", |
||
| 2838 | "100271831 3.752486 2.600814 \n", |
||
| 2839 | "100271832 0.000000 0.000000 \n", |
||
| 2840 | "100271835 0.366027 1.112313 \n", |
||
| 2841 | "100271836 3.345557 2.628879 \n", |
||
| 2842 | "100271849 1.285535 1.621034 \n", |
||
| 2843 | "100272146 1.149648 0.882753 \n", |
||
| 2844 | "100272147 4.885539 3.887128 \n", |
||
| 2845 | "100272216 0.224785 0.358273 \n", |
||
| 2846 | "100272217 0.921858 0.507322 \n", |
||
| 2847 | "100272228 0.769280 0.272411 \n", |
||
| 2848 | "100286793 3.590167 2.512924 \n", |
||
| 2849 | "100286844 0.509770 0.269866 \n", |
||
| 2850 | "100287227 0.157005 0.488973 \n", |
||
| 2851 | "100287569 0.088759 0.000000 \n", |
||
| 2852 | "100287704 0.000000 0.000000 \n", |
||
| 2853 | "100287718 0.000000 0.000000 \n", |
||
| 2854 | "100288380 0.000000 0.000000 \n", |
||
| 2855 | "100288778 6.325461 4.533454 \n", |
||
| 2856 | "100288801 0.000000 0.029885 \n", |
||
| 2857 | "100289341 1.300235 1.445110 \n", |
||
| 2858 | "100289635 3.363665 3.482014 \n", |
||
| 2859 | "100294720 0.000000 0.000000 \n", |
||
| 2860 | "100302401 0.650317 1.193713 \n", |
||
| 2861 | "100302640 0.000000 0.107661 \n", |
||
| 2862 | "100302650 1.168812 3.319754 \n", |
||
| 2863 | "100302692 1.043475 1.137322 \n", |
||
| 2864 | "100302736 1.240577 1.583428 \n", |
||
| 2865 | "100303453 0.066830 0.105619 \n", |
||
| 2866 | "100303728 0.818998 0.618132 \n", |
||
| 2867 | "\n", |
||
| 2868 | " TCGA-4Z-AA7M-01A-11R-A39I-07 TCGA-4Z-AA7N-01A-11R-A39I-07 \\\n", |
||
| 2869 | "ENTREZID \n", |
||
| 2870 | "1 1.612974 2.076237 \n", |
||
| 2871 | "2 6.235450 9.710621 \n", |
||
| 2872 | "9 2.643622 3.141316 \n", |
||
| 2873 | "10 0.000000 0.380386 \n", |
||
| 2874 | "12 0.434296 4.842291 \n", |
||
| 2875 | "13 0.244637 0.067852 \n", |
||
| 2876 | "14 6.690444 6.741365 \n", |
||
| 2877 | "15 0.085150 0.130796 \n", |
||
| 2878 | "16 5.714908 5.731613 \n", |
||
| 2879 | "18 4.889327 3.960333 \n", |
||
| 2880 | "19 3.255879 3.513993 \n", |
||
| 2881 | "20 3.087467 3.481200 \n", |
||
| 2882 | "21 1.052042 2.201756 \n", |
||
| 2883 | "22 4.367590 3.606886 \n", |
||
| 2884 | "23 6.738333 5.660017 \n", |
||
| 2885 | "24 0.803342 0.963160 \n", |
||
| 2886 | "25 4.265416 5.059879 \n", |
||
| 2887 | "26 0.304059 0.574648 \n", |
||
| 2888 | "27 2.840525 3.008115 \n", |
||
| 2889 | "28 0.049227 2.933275 \n", |
||
| 2890 | "29 4.548557 5.491118 \n", |
||
| 2891 | "30 6.568039 6.418584 \n", |
||
| 2892 | "31 4.899172 4.801196 \n", |
||
| 2893 | "32 1.871018 2.696572 \n", |
||
| 2894 | "33 0.401075 0.162440 \n", |
||
| 2895 | "34 5.060120 5.352350 \n", |
||
| 2896 | "35 4.255144 3.561433 \n", |
||
| 2897 | "36 3.025325 3.605907 \n", |
||
| 2898 | "37 7.826961 7.369623 \n", |
||
| 2899 | "38 4.294950 4.475646 \n", |
||
| 2900 | "... ... ... \n", |
||
| 2901 | "100271722 1.290149 1.200610 \n", |
||
| 2902 | "100271831 1.559259 2.873348 \n", |
||
| 2903 | "100271832 0.101151 0.000000 \n", |
||
| 2904 | "100271835 2.189107 1.305199 \n", |
||
| 2905 | "100271836 3.731009 3.673671 \n", |
||
| 2906 | "100271849 0.498564 4.324096 \n", |
||
| 2907 | "100272146 1.773980 1.153539 \n", |
||
| 2908 | "100272147 5.129546 4.113461 \n", |
||
| 2909 | "100272216 0.248630 0.490062 \n", |
||
| 2910 | "100272217 0.816486 0.395231 \n", |
||
| 2911 | "100272228 2.131252 1.101936 \n", |
||
| 2912 | "100286793 4.620199 2.752506 \n", |
||
| 2913 | "100286844 1.027578 0.293341 \n", |
||
| 2914 | "100287227 0.316336 0.159785 \n", |
||
| 2915 | "100287569 0.000000 0.637993 \n", |
||
| 2916 | "100287704 0.000000 0.000000 \n", |
||
| 2917 | "100287718 0.000000 0.000000 \n", |
||
| 2918 | "100288380 0.000000 0.378000 \n", |
||
| 2919 | "100288778 5.916186 5.359674 \n", |
||
| 2920 | "100288801 0.000000 0.000000 \n", |
||
| 2921 | "100289341 0.809817 1.299766 \n", |
||
| 2922 | "100289635 3.855801 3.120055 \n", |
||
| 2923 | "100294720 0.000000 0.000000 \n", |
||
| 2924 | "100302401 1.082908 0.427754 \n", |
||
| 2925 | "100302640 0.793848 0.076033 \n", |
||
| 2926 | "100302650 0.826337 4.768559 \n", |
||
| 2927 | "100302692 1.929626 0.876302 \n", |
||
| 2928 | "100302736 0.234748 0.608218 \n", |
||
| 2929 | "100303453 0.217259 0.000000 \n", |
||
| 2930 | "100303728 1.135417 0.860897 \n", |
||
| 2931 | "\n", |
||
| 2932 | " TCGA-4Z-AA7O-01A-31R-A39I-07 TCGA-4Z-AA7Q-01A-11R-A39I-07 \\\n", |
||
| 2933 | "ENTREZID \n", |
||
| 2934 | "1 0.870337 2.222218 \n", |
||
| 2935 | "2 7.270054 7.775153 \n", |
||
| 2936 | "9 2.077357 1.675782 \n", |
||
| 2937 | "10 0.056320 0.637087 \n", |
||
| 2938 | "12 0.000000 0.817122 \n", |
||
| 2939 | "13 7.387370 0.506860 \n", |
||
| 2940 | "14 7.059396 6.466467 \n", |
||
| 2941 | "15 0.000000 0.478062 \n", |
||
| 2942 | "16 5.883047 5.032016 \n", |
||
| 2943 | "18 4.559524 0.999417 \n", |
||
| 2944 | "19 1.193602 3.132178 \n", |
||
| 2945 | "20 2.447453 1.753626 \n", |
||
| 2946 | "21 0.261264 1.009647 \n", |
||
| 2947 | "22 3.189884 3.521772 \n", |
||
| 2948 | "23 5.480534 5.570752 \n", |
||
| 2949 | "24 0.533395 0.066792 \n", |
||
| 2950 | "25 3.456701 3.441491 \n", |
||
| 2951 | "26 0.489768 0.309481 \n", |
||
| 2952 | "27 1.988889 1.045557 \n", |
||
| 2953 | "28 0.000000 4.048759 \n", |
||
| 2954 | "29 4.567789 5.541956 \n", |
||
| 2955 | "30 6.085184 5.676482 \n", |
||
| 2956 | "31 4.411286 4.604509 \n", |
||
| 2957 | "32 0.690042 2.033386 \n", |
||
| 2958 | "33 0.000000 0.365014 \n", |
||
| 2959 | "34 4.347544 4.789519 \n", |
||
| 2960 | "35 3.889248 4.366157 \n", |
||
| 2961 | "36 3.095087 1.872858 \n", |
||
| 2962 | "37 8.441356 7.439627 \n", |
||
| 2963 | "38 2.691840 3.959515 \n", |
||
| 2964 | "... ... ... \n", |
||
| 2965 | "100271722 1.584978 0.413451 \n", |
||
| 2966 | "100271831 3.187062 2.483700 \n", |
||
| 2967 | "100271832 0.000000 0.073447 \n", |
||
| 2968 | "100271835 0.767436 0.521596 \n", |
||
| 2969 | "100271836 2.879152 1.792119 \n", |
||
| 2970 | "100271849 1.400875 2.327593 \n", |
||
| 2971 | "100272146 0.806941 1.016220 \n", |
||
| 2972 | "100272147 4.916463 3.606867 \n", |
||
| 2973 | "100272216 0.196283 0.183147 \n", |
||
| 2974 | "100272217 0.327062 0.488304 \n", |
||
| 2975 | "100272228 0.858047 1.873479 \n", |
||
| 2976 | "100286793 2.475664 4.030156 \n", |
||
| 2977 | "100286844 0.420398 0.283191 \n", |
||
| 2978 | "100287227 0.207284 0.164729 \n", |
||
| 2979 | "100287569 0.000000 0.647825 \n", |
||
| 2980 | "100287704 0.000000 0.000000 \n", |
||
| 2981 | "100287718 0.000000 0.000000 \n", |
||
| 2982 | "100288380 0.178236 0.186226 \n", |
||
| 2983 | "100288778 5.232589 4.997729 \n", |
||
| 2984 | "100288801 0.000000 0.093848 \n", |
||
| 2985 | "100289341 0.808111 0.659194 \n", |
||
| 2986 | "100289635 3.680738 3.217935 \n", |
||
| 2987 | "100294720 0.000000 0.030316 \n", |
||
| 2988 | "100302401 0.756725 0.145178 \n", |
||
| 2989 | "100302640 0.000000 0.477775 \n", |
||
| 2990 | "100302650 0.796422 0.823880 \n", |
||
| 2991 | "100302692 0.727365 0.428572 \n", |
||
| 2992 | "100302736 0.297075 0.860072 \n", |
||
| 2993 | "100303453 0.000000 0.000000 \n", |
||
| 2994 | "100303728 0.457222 0.802506 \n", |
||
| 2995 | "\n", |
||
| 2996 | " ... TCGA-ZF-AA4X-01A-11R-A38B-07 \\\n", |
||
| 2997 | "ENTREZID ... \n", |
||
| 2998 | "1 ... 1.523498 \n", |
||
| 2999 | "2 ... 5.611083 \n", |
||
| 3000 | "9 ... 3.949491 \n", |
||
| 3001 | "10 ... 0.505300 \n", |
||
| 3002 | "12 ... 0.551129 \n", |
||
| 3003 | "13 ... 1.877776 \n", |
||
| 3004 | "14 ... 6.842549 \n", |
||
| 3005 | "15 ... 0.000000 \n", |
||
| 3006 | "16 ... 5.766447 \n", |
||
| 3007 | "18 ... 2.835719 \n", |
||
| 3008 | "19 ... 2.267587 \n", |
||
| 3009 | "20 ... 3.753183 \n", |
||
| 3010 | "21 ... 3.021527 \n", |
||
| 3011 | "22 ... 4.114507 \n", |
||
| 3012 | "23 ... 6.430712 \n", |
||
| 3013 | "24 ... 1.379999 \n", |
||
| 3014 | "25 ... 4.609126 \n", |
||
| 3015 | "26 ... 1.756336 \n", |
||
| 3016 | "27 ... 2.060089 \n", |
||
| 3017 | "28 ... 2.940057 \n", |
||
| 3018 | "29 ... 6.306159 \n", |
||
| 3019 | "30 ... 7.011171 \n", |
||
| 3020 | "31 ... 5.489832 \n", |
||
| 3021 | "32 ... 2.531524 \n", |
||
| 3022 | "33 ... 2.082781 \n", |
||
| 3023 | "34 ... 6.376422 \n", |
||
| 3024 | "35 ... 4.455009 \n", |
||
| 3025 | "36 ... 2.938874 \n", |
||
| 3026 | "37 ... 8.781912 \n", |
||
| 3027 | "38 ... 4.490428 \n", |
||
| 3028 | "... ... ... \n", |
||
| 3029 | "100271722 ... 1.857436 \n", |
||
| 3030 | "100271831 ... 2.684300 \n", |
||
| 3031 | "100271832 ... 0.079084 \n", |
||
| 3032 | "100271835 ... 2.434429 \n", |
||
| 3033 | "100271836 ... 2.792174 \n", |
||
| 3034 | "100271849 ... 2.146905 \n", |
||
| 3035 | "100272146 ... 2.220002 \n", |
||
| 3036 | "100272147 ... 5.878317 \n", |
||
| 3037 | "100272216 ... 0.076785 \n", |
||
| 3038 | "100272217 ... 1.590953 \n", |
||
| 3039 | "100272228 ... 2.231822 \n", |
||
| 3040 | "100286793 ... 2.899274 \n", |
||
| 3041 | "100286844 ... 0.905923 \n", |
||
| 3042 | "100287227 ... 0.432181 \n", |
||
| 3043 | "100287569 ... 0.000000 \n", |
||
| 3044 | "100287704 ... 0.000000 \n", |
||
| 3045 | "100287718 ... 0.000000 \n", |
||
| 3046 | "100288380 ... 0.483296 \n", |
||
| 3047 | "100288778 ... 6.593197 \n", |
||
| 3048 | "100288801 ... 0.051291 \n", |
||
| 3049 | "100289341 ... 1.854680 \n", |
||
| 3050 | "100289635 ... 3.453396 \n", |
||
| 3051 | "100294720 ... 0.000000 \n", |
||
| 3052 | "100302401 ... 0.652977 \n", |
||
| 3053 | "100302640 ... 0.019199 \n", |
||
| 3054 | "100302650 ... 1.136914 \n", |
||
| 3055 | "100302692 ... 1.010132 \n", |
||
| 3056 | "100302736 ... 1.570871 \n", |
||
| 3057 | "100303453 ... 0.052402 \n", |
||
| 3058 | "100303728 ... 1.734920 \n", |
||
| 3059 | "\n", |
||
| 3060 | " TCGA-ZF-AA51-01A-21R-A39I-07 TCGA-ZF-AA52-01A-12R-A39I-07 \\\n", |
||
| 3061 | "ENTREZID \n", |
||
| 3062 | "1 1.944983 2.372653 \n", |
||
| 3063 | "2 8.084193 10.095678 \n", |
||
| 3064 | "9 1.548279 3.722545 \n", |
||
| 3065 | "10 0.000000 0.138816 \n", |
||
| 3066 | "12 1.555709 3.774938 \n", |
||
| 3067 | "13 0.696837 0.000000 \n", |
||
| 3068 | "14 7.154221 6.930621 \n", |
||
| 3069 | "15 0.000000 0.000000 \n", |
||
| 3070 | "16 4.790307 5.707889 \n", |
||
| 3071 | "18 1.746883 2.499375 \n", |
||
| 3072 | "19 2.991613 2.091500 \n", |
||
| 3073 | "20 3.149116 3.950087 \n", |
||
| 3074 | "21 1.113386 2.348143 \n", |
||
| 3075 | "22 3.389721 3.120593 \n", |
||
| 3076 | "23 5.604658 5.590098 \n", |
||
| 3077 | "24 0.300011 0.421376 \n", |
||
| 3078 | "25 3.930508 4.711956 \n", |
||
| 3079 | "26 0.761530 0.596701 \n", |
||
| 3080 | "27 1.888903 1.985187 \n", |
||
| 3081 | "28 0.047274 0.277321 \n", |
||
| 3082 | "29 5.983578 4.841091 \n", |
||
| 3083 | "30 6.898103 6.407046 \n", |
||
| 3084 | "31 4.361208 4.499776 \n", |
||
| 3085 | "32 1.201789 2.071635 \n", |
||
| 3086 | "33 0.051872 0.023798 \n", |
||
| 3087 | "34 4.577791 3.492034 \n", |
||
| 3088 | "35 4.415570 4.746772 \n", |
||
| 3089 | "36 1.959830 1.615353 \n", |
||
| 3090 | "37 8.247836 8.192882 \n", |
||
| 3091 | "38 4.263302 4.684854 \n", |
||
| 3092 | "... ... ... \n", |
||
| 3093 | "100271722 1.044742 1.666201 \n", |
||
| 3094 | "100271831 2.268963 4.460098 \n", |
||
| 3095 | "100271832 0.000000 0.000000 \n", |
||
| 3096 | "100271835 1.578586 4.078831 \n", |
||
| 3097 | "100271836 1.910625 1.574269 \n", |
||
| 3098 | "100271849 2.099291 1.335053 \n", |
||
| 3099 | "100272146 0.971965 0.934767 \n", |
||
| 3100 | "100272147 3.876211 4.675443 \n", |
||
| 3101 | "100272216 0.211775 0.113839 \n", |
||
| 3102 | "100272217 0.640856 0.574010 \n", |
||
| 3103 | "100272228 0.542195 1.069636 \n", |
||
| 3104 | "100286793 3.363391 2.931948 \n", |
||
| 3105 | "100286844 0.299887 0.299501 \n", |
||
| 3106 | "100287227 0.238998 0.406512 \n", |
||
| 3107 | "100287569 0.000000 0.297210 \n", |
||
| 3108 | "100287704 0.000000 0.000000 \n", |
||
| 3109 | "100287718 0.000000 0.000000 \n", |
||
| 3110 | "100288380 0.085724 0.000000 \n", |
||
| 3111 | "100288778 4.981928 6.003078 \n", |
||
| 3112 | "100288801 0.032005 0.000000 \n", |
||
| 3113 | "100289341 0.509933 1.492218 \n", |
||
| 3114 | "100289635 3.397759 3.569581 \n", |
||
| 3115 | "100294720 0.000000 0.000000 \n", |
||
| 3116 | "100302401 0.249060 0.581439 \n", |
||
| 3117 | "100302640 0.000000 0.642079 \n", |
||
| 3118 | "100302650 1.439982 2.574464 \n", |
||
| 3119 | "100302692 1.275280 0.552697 \n", |
||
| 3120 | "100302736 0.000000 1.594325 \n", |
||
| 3121 | "100303453 0.000000 0.000000 \n", |
||
| 3122 | "100303728 0.570759 0.795158 \n", |
||
| 3123 | "\n", |
||
| 3124 | " TCGA-ZF-AA53-01A-11R-A39I-07 TCGA-ZF-AA54-01A-11R-A39I-07 \\\n", |
||
| 3125 | "ENTREZID \n", |
||
| 3126 | "1 3.792826 3.479011 \n", |
||
| 3127 | "2 7.316936 8.761957 \n", |
||
| 3128 | "9 1.132057 2.568140 \n", |
||
| 3129 | "10 0.048032 0.048921 \n", |
||
| 3130 | "12 0.661099 3.624965 \n", |
||
| 3131 | "13 0.000000 0.186422 \n", |
||
| 3132 | "14 6.004271 7.079890 \n", |
||
| 3133 | "15 0.000000 0.147725 \n", |
||
| 3134 | "16 7.424335 8.709575 \n", |
||
| 3135 | "18 0.784887 1.138534 \n", |
||
| 3136 | "19 3.461593 4.309989 \n", |
||
| 3137 | "20 1.512966 3.063315 \n", |
||
| 3138 | "21 0.415792 1.146891 \n", |
||
| 3139 | "22 3.509229 3.879658 \n", |
||
| 3140 | "23 5.312926 6.285286 \n", |
||
| 3141 | "24 1.882620 0.130356 \n", |
||
| 3142 | "25 4.138851 4.864261 \n", |
||
| 3143 | "26 1.438399 0.121543 \n", |
||
| 3144 | "27 2.370396 3.736276 \n", |
||
| 3145 | "28 0.241962 0.000000 \n", |
||
| 3146 | "29 3.985534 5.395005 \n", |
||
| 3147 | "30 6.627765 4.923261 \n", |
||
| 3148 | "31 4.099796 4.310456 \n", |
||
| 3149 | "32 0.923636 1.525026 \n", |
||
| 3150 | "33 0.070492 0.118533 \n", |
||
| 3151 | "34 4.605242 4.283358 \n", |
||
| 3152 | "35 4.056638 3.347017 \n", |
||
| 3153 | "36 0.780055 2.305503 \n", |
||
| 3154 | "37 7.438942 7.362950 \n", |
||
| 3155 | "38 4.018424 5.138271 \n", |
||
| 3156 | "... ... ... \n", |
||
| 3157 | "100271722 1.198038 1.466321 \n", |
||
| 3158 | "100271831 4.180091 3.717881 \n", |
||
| 3159 | "100271832 0.000000 0.000000 \n", |
||
| 3160 | "100271835 1.537604 1.442136 \n", |
||
| 3161 | "100271836 1.408949 3.184371 \n", |
||
| 3162 | "100271849 1.070452 2.811217 \n", |
||
| 3163 | "100272146 0.105945 0.529838 \n", |
||
| 3164 | "100272147 4.671075 4.599586 \n", |
||
| 3165 | "100272216 0.062768 1.888743 \n", |
||
| 3166 | "100272217 0.210361 0.445683 \n", |
||
| 3167 | "100272228 0.187633 0.321110 \n", |
||
| 3168 | "100286793 3.169480 3.779393 \n", |
||
| 3169 | "100286844 0.202525 0.316737 \n", |
||
| 3170 | "100287227 0.025150 0.030891 \n", |
||
| 3171 | "100287569 0.268763 1.733056 \n", |
||
| 3172 | "100287704 0.000000 0.000000 \n", |
||
| 3173 | "100287718 0.000000 0.000000 \n", |
||
| 3174 | "100288380 0.078789 0.000000 \n", |
||
| 3175 | "100288778 5.389232 5.606450 \n", |
||
| 3176 | "100288801 0.000000 0.000000 \n", |
||
| 3177 | "100289341 0.808288 1.114229 \n", |
||
| 3178 | "100289635 2.940335 3.299210 \n", |
||
| 3179 | "100294720 0.091862 0.000000 \n", |
||
| 3180 | "100302401 0.362663 0.533748 \n", |
||
| 3181 | "100302640 0.146898 2.474504 \n", |
||
| 3182 | "100302650 0.854546 0.781950 \n", |
||
| 3183 | "100302692 0.986176 0.952333 \n", |
||
| 3184 | "100302736 2.214244 2.503191 \n", |
||
| 3185 | "100303453 0.000000 0.066504 \n", |
||
| 3186 | "100303728 0.475755 0.689829 \n", |
||
| 3187 | "\n", |
||
| 3188 | " TCGA-ZF-AA56-01A-31R-A39I-07 TCGA-ZF-AA58-01A-12R-A42T-07 \\\n", |
||
| 3189 | "ENTREZID \n", |
||
| 3190 | "1 1.405645 1.572033 \n", |
||
| 3191 | "2 8.294718 7.737907 \n", |
||
| 3192 | "9 2.522893 1.725319 \n", |
||
| 3193 | "10 0.229931 0.000000 \n", |
||
| 3194 | "12 4.513976 4.705967 \n", |
||
| 3195 | "13 1.209302 0.000000 \n", |
||
| 3196 | "14 7.159629 7.005162 \n", |
||
| 3197 | "15 0.000000 0.221314 \n", |
||
| 3198 | "16 6.086463 6.234755 \n", |
||
| 3199 | "18 3.009449 1.090132 \n", |
||
| 3200 | "19 3.239834 2.865977 \n", |
||
| 3201 | "20 2.664546 2.239061 \n", |
||
| 3202 | "21 0.973392 1.574075 \n", |
||
| 3203 | "22 3.396367 4.009166 \n", |
||
| 3204 | "23 6.186670 6.549178 \n", |
||
| 3205 | "24 2.567049 2.568703 \n", |
||
| 3206 | "25 4.814331 4.535544 \n", |
||
| 3207 | "26 1.735965 0.430035 \n", |
||
| 3208 | "27 1.990344 3.346693 \n", |
||
| 3209 | "28 2.330907 0.033785 \n", |
||
| 3210 | "29 5.227438 5.352269 \n", |
||
| 3211 | "30 6.389457 6.324138 \n", |
||
| 3212 | "31 5.287507 3.789480 \n", |
||
| 3213 | "32 1.321938 1.662648 \n", |
||
| 3214 | "33 0.513203 0.000000 \n", |
||
| 3215 | "34 4.977100 4.716416 \n", |
||
| 3216 | "35 4.584887 3.579932 \n", |
||
| 3217 | "36 3.151896 1.116940 \n", |
||
| 3218 | "37 7.659910 7.255310 \n", |
||
| 3219 | "38 4.254429 4.615857 \n", |
||
| 3220 | "... ... ... \n", |
||
| 3221 | "100271722 1.119355 0.912242 \n", |
||
| 3222 | "100271831 2.960833 3.142854 \n", |
||
| 3223 | "100271832 0.076156 0.000000 \n", |
||
| 3224 | "100271835 0.560257 3.070388 \n", |
||
| 3225 | "100271836 2.954052 1.761250 \n", |
||
| 3226 | "100271849 1.928666 1.942872 \n", |
||
| 3227 | "100272146 0.834684 0.672756 \n", |
||
| 3228 | "100272147 4.571879 5.662731 \n", |
||
| 3229 | "100272216 0.543836 0.491928 \n", |
||
| 3230 | "100272217 0.571828 0.559745 \n", |
||
| 3231 | "100272228 0.826413 0.900913 \n", |
||
| 3232 | "100286793 2.941597 4.904492 \n", |
||
| 3233 | "100286844 0.317757 0.184413 \n", |
||
| 3234 | "100287227 0.334906 0.054436 \n", |
||
| 3235 | "100287569 0.158122 0.487028 \n", |
||
| 3236 | "100287704 0.000000 0.000000 \n", |
||
| 3237 | "100287718 0.000000 0.000000 \n", |
||
| 3238 | "100288380 0.130626 0.177386 \n", |
||
| 3239 | "100288778 5.122558 5.558330 \n", |
||
| 3240 | "100288801 0.000000 0.000000 \n", |
||
| 3241 | "100289341 1.576462 1.462319 \n", |
||
| 3242 | "100289635 2.792782 3.012142 \n", |
||
| 3243 | "100294720 0.000000 0.000000 \n", |
||
| 3244 | "100302401 0.387988 0.907954 \n", |
||
| 3245 | "100302640 0.000000 0.969502 \n", |
||
| 3246 | "100302650 1.542125 0.491698 \n", |
||
| 3247 | "100302692 0.542730 0.421700 \n", |
||
| 3248 | "100302736 1.636781 0.250190 \n", |
||
| 3249 | "100303453 0.000000 0.000000 \n", |
||
| 3250 | "100303728 0.709897 0.812898 \n", |
||
| 3251 | "\n", |
||
| 3252 | " TCGA-ZF-AA5H-01A-11R-A39I-07 TCGA-ZF-AA5N-01A-11R-A42T-07 \\\n", |
||
| 3253 | "ENTREZID \n", |
||
| 3254 | "1 0.802134 0.420320 \n", |
||
| 3255 | "2 7.179355 4.904007 \n", |
||
| 3256 | "9 1.461496 1.847315 \n", |
||
| 3257 | "10 0.029659 0.000000 \n", |
||
| 3258 | "12 1.681905 3.356545 \n", |
||
| 3259 | "13 0.000000 0.000000 \n", |
||
| 3260 | "14 6.691151 7.000661 \n", |
||
| 3261 | "15 0.091143 0.000000 \n", |
||
| 3262 | "16 6.877003 5.877546 \n", |
||
| 3263 | "18 0.552370 2.801317 \n", |
||
| 3264 | "19 3.039675 4.248400 \n", |
||
| 3265 | "20 2.201044 4.033922 \n", |
||
| 3266 | "21 0.609913 0.356479 \n", |
||
| 3267 | "22 3.136087 2.831521 \n", |
||
| 3268 | "23 6.333991 5.442255 \n", |
||
| 3269 | "24 0.173096 0.388828 \n", |
||
| 3270 | "25 4.680990 3.357347 \n", |
||
| 3271 | "26 0.857632 0.090871 \n", |
||
| 3272 | "27 4.048708 1.476133 \n", |
||
| 3273 | "28 0.052927 0.293858 \n", |
||
| 3274 | "29 6.153357 4.272364 \n", |
||
| 3275 | "30 5.236563 6.822422 \n", |
||
| 3276 | "31 4.593572 4.810476 \n", |
||
| 3277 | "32 1.231275 0.364992 \n", |
||
| 3278 | "33 0.269587 0.000000 \n", |
||
| 3279 | "34 4.580350 3.954026 \n", |
||
| 3280 | "35 3.506765 4.248824 \n", |
||
| 3281 | "36 1.183204 1.778956 \n", |
||
| 3282 | "37 7.487467 8.403723 \n", |
||
| 3283 | "38 3.647883 4.821318 \n", |
||
| 3284 | "... ... ... \n", |
||
| 3285 | "100271722 1.382247 0.201691 \n", |
||
| 3286 | "100271831 3.235265 3.947347 \n", |
||
| 3287 | "100271832 0.000000 0.000000 \n", |
||
| 3288 | "100271835 0.290139 3.115400 \n", |
||
| 3289 | "100271836 2.324886 2.212781 \n", |
||
| 3290 | "100271849 1.679722 0.763542 \n", |
||
| 3291 | "100272146 1.000893 0.435765 \n", |
||
| 3292 | "100272147 5.320516 4.588917 \n", |
||
| 3293 | "100272216 0.038743 0.156490 \n", |
||
| 3294 | "100272217 0.433005 0.818466 \n", |
||
| 3295 | "100272228 0.489285 0.350919 \n", |
||
| 3296 | "100286793 4.198462 2.336612 \n", |
||
| 3297 | "100286844 0.434553 0.289544 \n", |
||
| 3298 | "100287227 0.165105 0.205411 \n", |
||
| 3299 | "100287569 0.093247 0.000000 \n", |
||
| 3300 | "100287704 0.000000 0.000000 \n", |
||
| 3301 | "100287718 0.000000 0.000000 \n", |
||
| 3302 | "100288380 0.346942 0.000000 \n", |
||
| 3303 | "100288778 4.949391 6.165033 \n", |
||
| 3304 | "100288801 0.018047 0.000000 \n", |
||
| 3305 | "100289341 2.086270 1.258471 \n", |
||
| 3306 | "100289635 3.320961 3.034379 \n", |
||
| 3307 | "100294720 0.000000 0.000000 \n", |
||
| 3308 | "100302401 1.447773 1.464589 \n", |
||
| 3309 | "100302640 1.071410 0.000000 \n", |
||
| 3310 | "100302650 0.583729 0.521218 \n", |
||
| 3311 | "100302692 0.510551 0.436014 \n", |
||
| 3312 | "100302736 3.023961 2.930088 \n", |
||
| 3313 | "100303453 0.050786 0.180068 \n", |
||
| 3314 | "100303728 0.446765 0.257565 \n", |
||
| 3315 | "\n", |
||
| 3316 | " TCGA-ZF-AA5P-01A-11R-A39I-07 \n", |
||
| 3317 | "ENTREZID \n", |
||
| 3318 | "1 1.271811 \n", |
||
| 3319 | "2 11.189585 \n", |
||
| 3320 | "9 2.535479 \n", |
||
| 3321 | "10 0.285390 \n", |
||
| 3322 | "12 7.470335 \n", |
||
| 3323 | "13 2.687331 \n", |
||
| 3324 | "14 6.747745 \n", |
||
| 3325 | "15 0.174953 \n", |
||
| 3326 | "16 5.983488 \n", |
||
| 3327 | "18 1.614018 \n", |
||
| 3328 | "19 2.405480 \n", |
||
| 3329 | "20 2.951935 \n", |
||
| 3330 | "21 3.029807 \n", |
||
| 3331 | "22 3.356951 \n", |
||
| 3332 | "23 6.053878 \n", |
||
| 3333 | "24 0.104554 \n", |
||
| 3334 | "25 5.748911 \n", |
||
| 3335 | "26 0.192650 \n", |
||
| 3336 | "27 2.492175 \n", |
||
| 3337 | "28 0.617408 \n", |
||
| 3338 | "29 4.636339 \n", |
||
| 3339 | "30 6.143988 \n", |
||
| 3340 | "31 4.482980 \n", |
||
| 3341 | "32 3.270376 \n", |
||
| 3342 | "33 0.264252 \n", |
||
| 3343 | "34 4.304655 \n", |
||
| 3344 | "35 5.511854 \n", |
||
| 3345 | "36 2.279470 \n", |
||
| 3346 | "37 7.616378 \n", |
||
| 3347 | "38 5.106815 \n", |
||
| 3348 | "... ... \n", |
||
| 3349 | "100271722 1.844866 \n", |
||
| 3350 | "100271831 3.500957 \n", |
||
| 3351 | "100271832 0.000000 \n", |
||
| 3352 | "100271835 2.146352 \n", |
||
| 3353 | "100271836 2.272575 \n", |
||
| 3354 | "100271849 2.142223 \n", |
||
| 3355 | "100272146 0.602256 \n", |
||
| 3356 | "100272147 4.575929 \n", |
||
| 3357 | "100272216 0.027260 \n", |
||
| 3358 | "100272217 0.503680 \n", |
||
| 3359 | "100272228 0.683409 \n", |
||
| 3360 | "100286793 3.119572 \n", |
||
| 3361 | "100286844 0.728117 \n", |
||
| 3362 | "100287227 0.222096 \n", |
||
| 3363 | "100287569 0.870693 \n", |
||
| 3364 | "100287704 0.000000 \n", |
||
| 3365 | "100287718 0.000000 \n", |
||
| 3366 | "100288380 0.000000 \n", |
||
| 3367 | "100288778 6.198619 \n", |
||
| 3368 | "100288801 0.000000 \n", |
||
| 3369 | "100289341 1.926313 \n", |
||
| 3370 | "100289635 3.507408 \n", |
||
| 3371 | "100294720 0.000000 \n", |
||
| 3372 | "100302401 0.650250 \n", |
||
| 3373 | "100302640 0.912122 \n", |
||
| 3374 | "100302650 4.386915 \n", |
||
| 3375 | "100302692 1.045705 \n", |
||
| 3376 | "100302736 0.894343 \n", |
||
| 3377 | "100303453 0.000000 \n", |
||
| 3378 | "100303728 0.665080 \n", |
||
| 3379 | "\n", |
||
| 3380 | "[20531 rows x 427 columns]" |
||
| 3381 | ] |
||
| 3382 | }, |
||
| 3383 | "execution_count": 14, |
||
| 3384 | "metadata": {}, |
||
| 3385 | "output_type": "execute_result" |
||
| 3386 | } |
||
| 3387 | ], |
||
| 3388 | "source": [ |
||
| 3389 | "exprs" |
||
| 3390 | ] |
||
| 3391 | }, |
||
| 3392 | { |
||
| 3393 | "cell_type": "code", |
||
| 3394 | "execution_count": null, |
||
| 3395 | "metadata": {}, |
||
| 3396 | "outputs": [], |
||
| 3397 | "source": [] |
||
| 3398 | } |
||
| 3399 | ], |
||
| 3400 | "metadata": { |
||
| 3401 | "kernelspec": { |
||
| 3402 | "display_name": "Python 2", |
||
| 3403 | "language": "python", |
||
| 3404 | "name": "python2" |
||
| 3405 | }, |
||
| 3406 | "language_info": { |
||
| 3407 | "codemirror_mode": { |
||
| 3408 | "name": "ipython", |
||
| 3409 | "version": 2 |
||
| 3410 | }, |
||
| 3411 | "file_extension": ".py", |
||
| 3412 | "mimetype": "text/x-python", |
||
| 3413 | "name": "python", |
||
| 3414 | "nbconvert_exporter": "python", |
||
| 3415 | "pygments_lexer": "ipython2", |
||
| 3416 | "version": "2.7.15" |
||
| 3417 | } |
||
| 3418 | }, |
||
| 3419 | "nbformat": 4, |
||
| 3420 | "nbformat_minor": 2 |
||
| 3421 | } |