[9987e3]: / man / get_tfs.Rd

Download this file

33 lines (28 with data), 743 Bytes

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/utils.R
\name{get_tfs}
\alias{get_tfs}
\title{Extract TF names from scRNA data and tf2motifs}
\usage{
get_tfs(
hummus,
assay = NULL,
store_tfs = TRUE,
output_file = NULL,
verbose = 0
)
}
\arguments{
\item{output_file}{(character) - Path to output file.}
\item{verbose}{(integer) - Verbosity level. Default: 1.}
\item{species}{(character) - Species name. Default: "human".}
\item{genes}{(vector(character)) - List of expressed genes.}
\item{tf2motifs}{(data.frame) - TF to motifs names mapping.
Columns: motif, tf.}
}
\value{
TFs (vector(character)) - List of TFs expressed with motifs.
}
\description{
Extract TF names from scRNA data and tf2motifs
}