45 lines (43 with data), 1.2 kB

# Generated by roxygen2: do not edit by hand

S3method("[[",Hummus_Object)
S3method(DefaultAssay,Hummus_Object)
S3method(VariableFeatures,Hummus_Object)
export("DefaultAssay<-")
export("VariableFeatures<-")
export(DefaultAssay)
export(Hummus_Object)
export(Initiate_Hummus_Object)
export(VariableFeatures)
export(add_network)
export(aggregate_matrix)
export(bipartite_peaks2genes)
export(bipartite_tfs2peaks)
export(compute_atac_peak_network)
export(compute_gene_network)
export(compute_tf_network)
export(define_binding_regions)
export(define_enhancers)
export(define_general_config)
export(define_grn)
export(define_output)
export(define_target_genes)
export(find_peaks_near_genes)
export(format_bipartites_names)
export(format_multiplex_names)
export(get_genome_annotations)
export(get_tf2motifs)
export(get_tfs)
export(peaks_in_regulatory_elements)
export(run_cicero_wrapper)
export(save_multilayer)
export(store_network)
exportClasses(Hummus_Object)
exportClasses(bipartite)
exportClasses(motifs_db)
exportClasses(multilayer)
exportClasses(multiplex)
import(sparseMatrixStats)
importClassesFrom(SeuratObject,Seurat)
importClassesFrom(Signac,Motif)
importClassesFrom(TFBSTools,PWMatrixList)
importFrom(methods,setClass)