added	man/add_network.Rd
added	man/aggregate_matrix.Rd
added	man/bipartite-class.Rd
added	man/bipartite_peaks2genes.Rd
added	man/bipartite_tfs2peaks.Rd
added	man/compute_atac_peak_network.Rd
added	man/compute_gene_network.Rd
added	man/compute_tf_network.Rd
added	man/dMcast.Rd
added	man/define_binding_regions.Rd
added	man/define_enhancers.Rd
added	man/define_general_config.Rd
added	man/define_grn.Rd
added	man/define_output.Rd
added	man/define_target_genes.Rd
added	man/fast_aggregate.Rd
added	man/figures/Fig_0001.jpg
added	man/figures/hummus_logo.png
added	man/figures/logo.png
added	man/find_peaks_near_genes.Rd
added	man/format_bipartites_names.Rd
added	man/format_multiplex_names.Rd
added	man/get_genome_annotations.Rd
added	man/get_tf2motifs.Rd
added	man/get_tfs.Rd