--- a +++ b/man/get_tfs.Rd @@ -0,0 +1,32 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/utils.R +\name{get_tfs} +\alias{get_tfs} +\title{Extract TF names from scRNA data and tf2motifs} +\usage{ +get_tfs( + hummus, + assay = NULL, + store_tfs = TRUE, + output_file = NULL, + verbose = 0 +) +} +\arguments{ +\item{output_file}{(character) - Path to output file.} + +\item{verbose}{(integer) - Verbosity level. Default: 1.} + +\item{species}{(character) - Species name. Default: "human".} + +\item{genes}{(vector(character)) - List of expressed genes.} + +\item{tf2motifs}{(data.frame) - TF to motifs names mapping. +Columns: motif, tf.} +} +\value{ +TFs (vector(character)) - List of TFs expressed with motifs. +} +\description{ +Extract TF names from scRNA data and tf2motifs +}