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b/man/get_tfs.Rd |
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% Generated by roxygen2: do not edit by hand |
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% Please edit documentation in R/utils.R |
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\name{get_tfs} |
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\alias{get_tfs} |
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\title{Extract TF names from scRNA data and tf2motifs} |
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\usage{ |
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get_tfs( |
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hummus, |
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assay = NULL, |
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store_tfs = TRUE, |
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output_file = NULL, |
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verbose = 0 |
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) |
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} |
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\arguments{ |
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\item{output_file}{(character) - Path to output file.} |
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\item{verbose}{(integer) - Verbosity level. Default: 1.} |
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\item{species}{(character) - Species name. Default: "human".} |
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\item{genes}{(vector(character)) - List of expressed genes.} |
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\item{tf2motifs}{(data.frame) - TF to motifs names mapping. |
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Columns: motif, tf.} |
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} |
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\value{ |
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TFs (vector(character)) - List of TFs expressed with motifs. |
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} |
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\description{ |
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Extract TF names from scRNA data and tf2motifs |
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} |