|
a |
|
b/man/Initiate_Hummus_Object.Rd |
|
|
1 |
% Generated by roxygen2: do not edit by hand |
|
|
2 |
% Please edit documentation in R/hummus_objet.R |
|
|
3 |
\name{Initiate_Hummus_Object} |
|
|
4 |
\alias{Initiate_Hummus_Object} |
|
|
5 |
\title{Initiate a hummus object} |
|
|
6 |
\usage{ |
|
|
7 |
Initiate_Hummus_Object( |
|
|
8 |
seurat_assays, |
|
|
9 |
active.assay = NULL, |
|
|
10 |
multilayer = NULL, |
|
|
11 |
motifs_db = NULL |
|
|
12 |
) |
|
|
13 |
} |
|
|
14 |
\arguments{ |
|
|
15 |
\item{seurat_assays}{A Seurat object or a list of Seurat assays} |
|
|
16 |
|
|
|
17 |
\item{active.assay}{The name of the active assay. Default: NULL} |
|
|
18 |
|
|
|
19 |
\item{multilayer}{A multilayer object. Default: NULL} |
|
|
20 |
|
|
|
21 |
\item{motifs_db}{A motifs_db object. Default: NULL} |
|
|
22 |
} |
|
|
23 |
\value{ |
|
|
24 |
A hummus object |
|
|
25 |
} |
|
|
26 |
\description{ |
|
|
27 |
Initiate a hummus object |
|
|
28 |
} |
|
|
29 |
\examples{ |
|
|
30 |
seurat_object <- Seurat::CreateSeuratObject(counts = matrix(rnorm(1000), nrow = 100, ncol = 10)) |
|
|
31 |
hummus <- InitiateHummus_Object(seurat_object) |
|
|
32 |
hummus |
|
|
33 |
} |