--- a
+++ b/NAMESPACE
@@ -0,0 +1,44 @@
+# Generated by roxygen2: do not edit by hand
+
+S3method("[[",Hummus_Object)
+S3method(DefaultAssay,Hummus_Object)
+S3method(VariableFeatures,Hummus_Object)
+export("DefaultAssay<-")
+export("VariableFeatures<-")
+export(DefaultAssay)
+export(Hummus_Object)
+export(Initiate_Hummus_Object)
+export(VariableFeatures)
+export(add_network)
+export(aggregate_matrix)
+export(bipartite_peaks2genes)
+export(bipartite_tfs2peaks)
+export(compute_atac_peak_network)
+export(compute_gene_network)
+export(compute_tf_network)
+export(define_binding_regions)
+export(define_enhancers)
+export(define_general_config)
+export(define_grn)
+export(define_output)
+export(define_target_genes)
+export(find_peaks_near_genes)
+export(format_bipartites_names)
+export(format_multiplex_names)
+export(get_genome_annotations)
+export(get_tf2motifs)
+export(get_tfs)
+export(peaks_in_regulatory_elements)
+export(run_cicero_wrapper)
+export(save_multilayer)
+export(store_network)
+exportClasses(Hummus_Object)
+exportClasses(bipartite)
+exportClasses(motifs_db)
+exportClasses(multilayer)
+exportClasses(multiplex)
+import(sparseMatrixStats)
+importClassesFrom(SeuratObject,Seurat)
+importClassesFrom(Signac,Motif)
+importClassesFrom(TFBSTools,PWMatrixList)
+importFrom(methods,setClass)