--- a
+++ b/.github/workflows/pkgdown.yaml
@@ -0,0 +1,64 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master, dev_SeuratV5]
+  pull_request:
+    branches: [main, master, dev_SeuratV5]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, any::reticulate, local::., any::devtools
+          needs: website
+
+      - uses: actions/setup-python@v2
+        with:
+          python-version: '3.10'
+          
+      - name: Setup hummuspy env
+        run: |
+          reticulate::conda_create("r-reticulate", packages="python==3.10")
+          reticulate::py_install("hummuspy", envname = "r-reticulate", pip=TRUE)
+        shell: Rscript {0}
+
+      - name: ubuntu setup for Monocle3
+        run: sudo apt-get install libgdal-dev libgeos-dev libproj-dev
+      
+      - name: Install Monocle3
+        run: devtools::install_github('cole-trapnell-lab/monocle3')
+        shell: Rscript {0}
+        
+      - name: Install Cicero
+        run: devtools::install_github("cole-trapnell-lab/cicero-release", ref = "monocle3")
+        shell: Rscript {0}
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/github-pages-deploy-action@v4.4.1
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs