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# HuMMuS <img src="man/figures/hummus_logo.png?format=raw" align="right" width="180"/> |
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# HuMMuS <img src="man/figures/hummus_logo.png?raw=true" align="right" width="180"/> |
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[](https://github.com/cantinilab/HuMMuS/actions/workflows/pages/pages-build-deployment?theme=flickr) |
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[](https://github.com/cantinilab/HuMMuS/actions/workflows/pages/pages-build-deployment?theme=flickr) |
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[](https://img.shields.io/pypi/v/hummuspy?color=pink) |
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[](https://img.shields.io/pypi/v/hummuspy?color=pink) |
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To reproduce HuMMuS results presented in the manuscript, preprocessed data [are accessible here](https://figshare.com/projects/Molecular_mechanisms_reconstruction_from_single-cell_multi-omics_data_with_HuMMuS/168899) |
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To reproduce HuMMuS results presented in the manuscript, preprocessed data [are accessible here](https://figshare.com/projects/Molecular_mechanisms_reconstruction_from_single-cell_multi-omics_data_with_HuMMuS/168899) |
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<br> For quick tests, the Chen dataset preprocessed is accessible directly through the package as a Seurat object: `load(chen_dataset)`, along with a subset version `load(chen_dataset_subset)`. |
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<br> For quick tests, the Chen dataset preprocessed is accessible directly through the package as a Seurat object: `load(chen_dataset)`, along with a subset version `load(chen_dataset_subset)`. |
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## Cite us |
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## Cite us |
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Trimbour R., Deutschmann I. M., Cantini L. Molecular mechanisms reconstruction from single-cell multi-omics data with HuMMuS. Bioinformatics (2024), btae143. doi: https://doi.org/10.1093/bioinformatics/btae143 |
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Trimbour R., Deutschmann I. M., Cantini L. Molecular mechanisms reconstruction from single-cell multi-omics data with HuMMuS. Bioinformatics (2024), btae143. doi: https://doi.org/10.1093/bioinformatics/btae143 |
Datasets
Models
